Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00256 ATGTCTTTATTTGATATCTTACTTTTAAATTATCTTTTTTTACAGGGATTGTTGCTGTTGTCAATGGATTTGATGTCTAGTTCATCTGAAATTGGCTCATTGCCTGTTGTTGTTTCCTCTGGGCCATTGGCTGTTGTTGATAGCTCTGAGCGATTGCATGTTGTTGATAGCTCTGAAACATGTGTTGATAAAAAAGAATATTGGGAGTCTCTTGTTTTTAATTCTATTGAAGAGGTTGAAAAATTTTATGGTGATTATGCATTTAATAATGGGTTTTCAATTCGGACTATGTTGAAATCAAAAAAGAATTCACAGAATAAGCCATCTGATAAAGTACATTATCTACGCTATGTTTGTAACAAACAAGGTTACAAGAAAGGAAGTTTGCTTGATCCGAAGAACAAACCAACATCAGATAGTCCGGTTGTTGTTGAATTTGAGAAAGTTAAAGAAAAAGCCGAGGAAAGGATTGGTTGTACAGCTGGTATTTTTTTGAAGTTGGATGAAACTCTGAATGCATATAAGATATACAAATGGGATGTGCCTCATTGTCACCCGTTACATAAAGCGGAGCATGGACGTTTTTTGAGATCATTTAGAGTAGTCAATGAAGTGCAAGGACAGTTAGCTGTAATCAATTCCAAAGCTGGAATGTCCATGAGAACTTCTTATGAAGTAATGGGTCAGGGAGTTGGAGGCACAAATAATCTCCCTTTTCGATTTTCGGATTTAAAGAATTATCTGATGACGAAACGTCAGAAAGAGATGTTTGTTGGTGAAGCAACTGTGATTCAGGAATTTTTTAGGAATGAAGCGCTCTCGAAACCATCCTTTTATTATGATATCCAAGTTGATGCTGCGGAAGATATAGCTAGTATTTTTTGGGCAGATGGGATTATGCAGCTTGATTATGCTTTATTTGGTGATGTTATCAGCTTTGATACGACCTACCGAACCAACAATCAGTATCGCCCATTAGCTGCATTCATGGGCTTTGATAATCATCGTAAGAGTGTGTTGTTTGGTGCTGCCCTACTATATGATGAGACCACAGCTACTTTTGATTGGTTGTTCACAACTTTTTTGAGGTGTATGGCAAATAAGAAACCAAAGACAATATATACAGACCAAGCTACTGCGTTGTTGAAGTCAGTGCCAAACATTTTTGAAGGTGTTTTTCATGGACTTTGCTCATGGCATATGTCAGAGAATGCAAAGAAAAACCTTGGGTCCCACGCAAACAGTGCTTTTTTTGATGAGTTAAATATCTTGATTTCAAGTGTAGACAATGAAGCTGATTTTGATTACAATTGGGATCAAATGATGAAAAATTGTTTTGATGGAAGGCCAACTTCAGACTTTAGTTGGCTTGTTCAAACTCACAAGAATCGCATGCATTGGTCTTCAGCTTGGGTGAAGTCACATTTTACGGCCGGTTTGAAAACGACTCAATTAAGTGAGTCTTTCAATGCTTTTCTCCGTGGATTTCTGCAGCCAGACCATTCACTTGTTCGATTCTTCAGTCATTTTAACATGATGGTTCAGAGAATGAGGGATAATCATGCTGAGTCTGACTTCAAGGCTGCAAATACTAGAACAAAAAACAATTACCCAAACAGTCAGCTGATGCGGTCTGTGGTAAACAAGTACACACCATCTAGCTTTGCATTCATTCATAGGCAGTATGATCTTTCGTTCATATACTATTATGAAGAGGACACAACTCAAGTGTCTCCCTTCAATAAGGTTTTCAAAGTTTTTACCATTGAACATGTTCATGAACCTGATGAAGTAGTTGCTGCTAATTATGATGATGTTGGTAATGAAGTAGTTGGGCTTTCAAATCATGATGTCTTGGATGAAGTAATTAATGAAAATCTTTCCGCAAAATCTGTTGATCATCATCGTCTTGATGAAAGGGTTGTGACAATTGATACCGAGAAAAAAAGAATGAGCTGTACATGTCGTATGTTTGAGAACAGAGGTTTTTTATGTCGTCATGTTTTCAGAATCTTAGAGTATTTAGGTGGTTCTGTCCAATACCATGGTTTGAAAACAATACCTGCGGAATATGTTTTAAAGCGTTGGTGTAGAGATGCGCGTCAGTCGTTTGATAAGCTGAATTCCACTGTCGATGTTGCCACTGAAGCTACGACTCAAGCACAACGATATCAACAGATTTGTGCTGTTACAGTTCAGCTGTCTACACGTGTTTCCGTAGATCCCGAGGCTTCTCAAATTTTTCTTAATGGTGTTCTTGAAGCTGGGAAAAAGGCAGAGGAGTTGCTTATGCGTAAAGGTATTGGTATTGTTACTGGCCCATCGTCCGGGACGCCATCTAAATCTTCCAATACAGCTGCTGCTAGTGAACCATCTGATGGGGTAAAGTCCACTGCTCCAAAATTCAAAGCAAGATCAAATCCAATTAGATCAAAGAAGCGACTTAAATCTGATTATGAATTGTCTAGAGATAGGCAAGAGAGGCGAGAGAGGCAAAAAGTCATTGTTCAGCGGAAGAATCAAATGAGAGATGATGAGGCTCAAAAGGGAAAAGAGGCTACTGATTGA 2568 0.3824 MSLFDILLLNYLFLQGLLLLSMDLMSSSSEIGSLPVVVSSGPLAVVDSSERLHVVDSSETCVDKKEYWESLVFNSIEEVEKFYGDYAFNNGFSIRTMLKSKKNSQNKPSDKVHYLRYVCNKQGYKKGSLLDPKNKPTSDSPVVVEFEKVKEKAEERIGCTAGIFLKLDETLNAYKIYKWDVPHCHPLHKAEHGRFLRSFRVVNEVQGQLAVINSKAGMSMRTSYEVMGQGVGGTNNLPFRFSDLKNYLMTKRQKEMFVGEATVIQEFFRNEALSKPSFYYDIQVDAAEDIASIFWADGIMQLDYALFGDVISFDTTYRTNNQYRPLAAFMGFDNHRKSVLFGAALLYDETTATFDWLFTTFLRCMANKKPKTIYTDQATALLKSVPNIFEGVFHGLCSWHMSENAKKNLGSHANSAFFDELNILISSVDNEADFDYNWDQMMKNCFDGRPTSDFSWLVQTHKNRMHWSSAWVKSHFTAGLKTTQLSESFNAFLRGFLQPDHSLVRFFSHFNMMVQRMRDNHAESDFKAANTRTKNNYPNSQLMRSVVNKYTPSSFAFIHRQYDLSFIYYYEEDTTQVSPFNKVFKVFTIEHVHEPDEVVAANYDDVGNEVVGLSNHDVLDEVINENLSAKSVDHHRLDERVVTIDTEKKRMSCTCRMFENRGFLCRHVFRILEYLGGSVQYHGLKTIPAEYVLKRWCRDARQSFDKLNSTVDVATEATTQAQRYQQICAVTVQLSTRVSVDPEASQIFLNGVLEAGKKAEELLMRKGIGIVTGPSSGTPSKSSNTAAASEPSDGVKSTAPKFKARSNPIRSKKRLKSDYELSRDRQERRERQKVIVQRKNQMRDDEAQKGKEATD 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00256 855 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 62 758 IPR031052 GO:0006355
Trre3g00256 855 MobiDBLite consensus disorder prediction 773 792 - -
Trre3g00256 855 ProSiteProfiles Zinc finger SWIM-type profile. 640 676 IPR007527 GO:0008270
Trre3g00256 855 Pfam SWIM zinc finger 652 668 IPR007527 GO:0008270
Trre3g00256 855 Pfam FAR1 DNA-binding domain 81 188 IPR004330 -
Trre3g00256 855 Pfam MULE transposase domain 310 404 IPR018289 -
Trre3g00256 855 MobiDBLite consensus disorder prediction 770 855 - -
Trre3g00256 855 SMART 26again6 651 678 IPR006564 GO:0008270
Trre3g00256 855 MobiDBLite consensus disorder prediction 811 855 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00256 Trre-Chr3 1692679 1700204 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre3g00256 FAR1 7.9e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00256 - - mtr:120577859 1242.25