Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00251 ATGGATGGAACAAACAGAGGAGAAGCTGAACGATGGCTATACACAGCGAACAAACTTCTGAGCGCGCGTGATCTACACGGCGCTCGTTCCTTCGCCATTCGTGCAAGAGAATCCGACCCGAGATTCGAAGCAACGGAGCTCCTTCTCGCCGTTATCGACACTCTGTTAGCCGGTGAAGCGAGGATCAAAGAACATCTCGATTATTACGCCGTTCTTCAAATCATCCGTTATACTCAGAATATTGAGTATATCGCCGATCAATATCGCCGCCTTGCCATCCTCCTTGACCCTAATCGGAATCCTTTCGCTTATGCTGCTCATGCTTTCTCTCTTGTTCACGATGCTTGGTCGATTTTCTCAAATCCGCATAAGAAAGCTCTTTATGATGAACAGCTTCATTTTCTTACTCAACCGCCACCACCGCAACAACAACCAATTCAACCACCGCCGCAACAGCAACAGCAGTTTTTTCAACCTCCTTCACCACCACAGCCACAGCCGCAACCGATTCAATCTCCTTATCCTCAGGTTCAAGTGAATCACAATCACAGTCACAGTCAGCAACAGAGGAAAAACCCTAGGTCATCTAATGAAGCTAGGGTAGTTCACGAGGAGCAAAATAATGGGCCGAGTTATGACAATGCTGATGAGCACACTGGGCCGAGGCCCAGGCCTGCTGTGGATAGGCCGGGTGGAACCGACGGTGGAAGTTTCTGGACAGCTTGTCCTTACTGTTTTGGCATGTTTGAGTATCCTAAGGTTTATGAGGATTGTACCCTCCGGTGTCAGAATTGTAGGAGGGGGTTTCATGCCGTGGTGGTGCGGGCACCGCCGGAGCTTACTGAAGATGAAGGGGGGAAAGACGGTGGTTCGTTTTGCAGCTTTGGGTATTTCCCTTTAGGGTTTACTGGGAATTTTAAGGATATCAGTGGGTCATCTTCGGAATGGAACCCTATTTCTCCTTTGTTTCCTTGCCCTAGTAATTCCAAGAAGGATGCTAGGAAGGGGCCTGTTAGTTATTATGATCATGATACATGTGCGGCATTCGCGGAGCTTTCGGATGAAACTGAGGATGATACTGATGATGATGATTGGAGGAATGGGAATGGTACCTCAGGGAAGAAGATGGGTAAGAGAAGGAGGAGGAGGAGAAGGACTTTTGGTGGCGGTGCTGGTGATGAAAGGAGACCGATTGATAGGCCGAGGAGGGTGGTTCAGAATGGTAATGCTGGAAATGATAATGGTGGTGGTAGTGATAATGTGGTTGATGGTGAGGCTGTTGATGCTGTTTCTGCGCCTAGAATGCTGTCCAATGTTGAAGCTAGCAAGAGAGCTGTGTTGAGTGGTGTGAGGAGGAGGGGTGCTGGAAATTTGGGTAAGTTGGATTTAAATGTGGAGTTTAGCAATGAGGTAGAAGAAGCTGTTGCTGCTGCTGGAATGAAAGAAGGGAATGTGAATGGGACTGGAAATGCTGAGGATAATATTGAAGGAATTGGGTTTTTTGAAGGGCTTGATGAGTTCCTTAATAGCTTACCAATTCTTAATGTTGTTGCAGATGATAAGGTTAAGTGTCATTAG 1578 0.4734 MDGTNRGEAERWLYTANKLLSARDLHGARSFAIRARESDPRFEATELLLAVIDTLLAGEARIKEHLDYYAVLQIIRYTQNIEYIADQYRRLAILLDPNRNPFAYAAHAFSLVHDAWSIFSNPHKKALYDEQLHFLTQPPPPQQQPIQPPPQQQQQFFQPPSPPQPQPQPIQSPYPQVQVNHNHSHSQQQRKNPRSSNEARVVHEEQNNGPSYDNADEHTGPRPRPAVDRPGGTDGGSFWTACPYCFGMFEYPKVYEDCTLRCQNCRRGFHAVVVRAPPELTEDEGGKDGGSFCSFGYFPLGFTGNFKDISGSSSEWNPISPLFPCPSNSKKDARKGPVSYYDHDTCAAFAELSDETEDDTDDDDWRNGNGTSGKKMGKRRRRRRRTFGGGAGDERRPIDRPRRVVQNGNAGNDNGGGSDNVVDGEAVDAVSAPRMLSNVEASKRAVLSGVRRRGAGNLGKLDLNVEFSNEVEEAVAAAGMKEGNVNGTGNAEDNIEGIGFFEGLDEFLNSLPILNVVADDKVKCH 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00251 525 SMART dnaj_3 66 124 IPR001623 -
Trre3g00251 525 Pfam DnaJ domain 67 129 IPR001623 -
Trre3g00251 525 MobiDBLite consensus disorder prediction 135 232 - -
Trre3g00251 525 MobiDBLite consensus disorder prediction 173 195 - -
Trre3g00251 525 Gene3D DnaJ domain 65 205 IPR036869 -
Trre3g00251 525 MobiDBLite consensus disorder prediction 387 402 - -
Trre3g00251 525 ProSiteProfiles dnaJ domain profile. 67 132 IPR001623 -
Trre3g00251 525 CDD DnaJ 67 121 IPR001623 -
Trre3g00251 525 MobiDBLite consensus disorder prediction 354 423 - -
Trre3g00251 525 MobiDBLite consensus disorder prediction 138 172 - -
Trre3g00251 525 SUPERFAMILY Chaperone J-domain 62 134 IPR036869 -
Trre3g00251 525 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00251 Trre-Chr3 1644415 1645992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00251 8 523 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 39.811 6.36e-96 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00251 - - mtr:11433870 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03965 7 47872034 47873098 Trre3g00251 3 1644415 1645992 PCT