Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00241 ATGGGAGTTGAGAAGCAAGTTGTTCGTCCTGGAAACGGTCCCAAGCCAAATCCCGGTCAGAACGTCACTGTTCACTGCACCGGTTACGGGAAAAACGGTGATCTTTCTCAGAAGTTCTGGAGCACAAAGGATCCTGGTCAGAATCCCTTCACTTTCAAAATCGGTCAAGGTTCTGTTATCAAAGGATGGGATGAAGGTGTCCTTGGCATGCAAATCGGCGAAATTGCTCGTCTCCGGTGCTCTCCTGATTATGCCTATGGTGCCAGTGGCTTTCCTGCTTGGGGAATACAGCCCAACTCTGTCTTGGAGTTTGAGATCGAGGTCTTAAGTGCACAATGA 339 0.4926 MGVEKQVVRPGNGPKPNPGQNVTVHCTGYGKNGDLSQKFWSTKDPGQNPFTFKIGQGSVIKGWDEGVLGMQIGEIARLRCSPDYAYGASGFPAWGIQPNSVLEFEIEVLSAQ 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00241 112 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 19 112 IPR001179 GO:0003755
Trre3g00241 112 FunFam Peptidylprolyl isomerase 1 112 - -
Trre3g00241 112 Gene3D - 1 112 IPR046357 GO:0003755
Trre3g00241 112 MobiDBLite consensus disorder prediction 1 23 - -
Trre3g00241 112 SUPERFAMILY FKBP-like 2 110 - -
Trre3g00241 112 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 14 109 IPR001179 GO:0003755
Trre3g00241 112 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 2 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00241 Trre-Chr3 1579635 1580984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00241 2 110 Calmodulin-binding Proteins AT5G48570 40.909 2.38e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00241 K01802 - gmx:100500283 218.394