Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00235 ATGGGATTTCATCACAGAAAATTTCTCACAGAATTATGTGAGTTAATATGTCATGGAAAAGAATCTATATCAAATTGTTCATCTAACAACAAAGATTGCACCACCGTTTGTTTCAAACTCTGTCTTCCCAATCCTCAATACCCATTTTTCAATCATCCACCACCACCACCACCACCACAACATGTTCCTACTTCTTTCGTCAACCACAAACTCACCAATTACTTCATCCTTACCCTTTCTCTTGTTGCTTTTATTTTCTTTCTTGTTTGTATTCGTGCAATTTGTATCAGTTTTAGGTCAAGAAGAAGAAGAAGATTATTGGCAGTGACAAGAGCATCACCTTCATCAGCATCATCATCATCAACAACAATTCAACAAATTGGTCAGAATTTTGATGAAAATCAACATGTTGTGGATCATCCAATTTGGTATATTCGAACCCTAGGTCTTAATCAATCTGTTATAAATACAATTAGTGTTTGTAAGTATAAGAAAGGTGAAGGTTTGATTGAAGGAACTGAATGTTCTGTTTGTTTGAGTGAATTTGAAGAAGATGAAAATCTTAGACTTTTACCTAAGTGTAATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGGTCACATACTAATTGTCCTATGTGTAGGGCTCCAATTGTTAATCCTAACCCTGCAATTGCAAGGGTAGAGTCTTTGGAGCCTGTTGTCGATTCTAGTTCTAGTTCTAGTTCAAGTTCAAGTTCATTGGAACATACACAAATTGAGGTTTTTGATGAAACCAATTTAGGGTTTGAAAGCTGTGATTTTGATTCTGAATTGAGGAATAGGGCGGCGGCAGAAGAAGAAGAAGGAGAAGGGCAATTGGGGGTATTTGAAAATGAAAGGCGAATTGTCGATGCGGTTAGTGTTGGTCGGCCTAGGAGATCGGTATCTATGGATGATTCTTTTGTTGCAAATATCAATAATGCCCTTGCAAATGTTCTATCAATAGAAGAATCTAAAGGTAGTAGTAGCTTTTCTTTTAGGTCAACAAGATATTTGCAGGGTGTTCCTAGTCCAATGAAGAGATCAAGTTCATACAATGGGAAATTTTTTCTGTCTTGGTATGGCCGCACTCAGAAGAAGCCGAATGCTATTCTGAGAAGCTTTTAA 1155 0.3671 MGFHHRKFLTELCELICHGKESISNCSSNNKDCTTVCFKLCLPNPQYPFFNHPPPPPPPQHVPTSFVNHKLTNYFILTLSLVAFIFFLVCIRAICISFRSRRRRRLLAVTRASPSSASSSSTTIQQIGQNFDENQHVVDHPIWYIRTLGLNQSVINTISVCKYKKGEGLIEGTECSVCLSEFEEDENLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVNPNPAIARVESLEPVVDSSSSSSSSSSSLEHTQIEVFDETNLGFESCDFDSELRNRAAAEEEEGEGQLGVFENERRIVDAVSVGRPRRSVSMDDSFVANINNALANVLSIEESKGSSSFSFRSTRYLQGVPSPMKRSSSYNGKFFLSWYGRTQKKPNAILRSF 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00235 384 ProSiteProfiles Zinc finger RING-type profile. 175 217 IPR001841 -
Trre3g00235 384 FunFam RING-H2 finger protein ATL54 150 223 - -
Trre3g00235 384 SMART ring_2 175 216 IPR001841 -
Trre3g00235 384 SUPERFAMILY RING/U-box 169 223 - -
Trre3g00235 384 CDD RING-H2_EL5-like 174 217 - -
Trre3g00235 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 224 IPR013083 -
Trre3g00235 384 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 68 239 IPR044675 -
Trre3g00235 384 Pfam Ring finger domain 174 217 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00235 Trre-Chr3 1552450 1553691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00235 137 364 C3H Transcription Factor Family AT4G33565 42.544 2.93e-45 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00235 - - tpra:123908556 537.339