LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre3g00229	ATGATGGCAACCGCCGATGATCCAGAATACTGGACGAAACTGATGGCCACTTACCTCCTCCGCCCCGAATCCGACCATTCCGATCAGCTCCGATCCATTGTTTCTTCTCCCGATTTCAATCTTCATTTTCCTCTCTACGTCGATTTTGCAGAATTGTTGGATTATGATCCTCGCATTGCTCATCTCATCTTTTCCCAATCCAATACATATCTTCAACTATTCGATGAAGCTGCTCTTAGGGTTCATAGAGTCGTGTTAGGAGAAATGGCTGGTGATGACAAGAATAATGTGGTCGAGAAAAAGTACATTCACGTTCGGATTAACATAAGTGGTTCTCCCCTTGAATGCCCTGAGACTTTTCCGAGCATAGGACGTGTACGGGTGCAACACCGAGGGATTCTTCTCACTCTCAAAGGGATAGTAATCAGGTCGGGAGCTATCAAGATGCATGAAGGAGAGAGGAAGTACATGTGCCACAAATGCAAAAATAGCTTCACAGTTCATCCTGAGGTGGAAGCTCGAAACTCCATATCATTACCTTCAATTTGTCCAATTCAGAAGCCAAAGCCCTGTGGGGGTACAAAATTCCAGTATGTAGAAAATACTATAGTGTGCCATGATTATCAGGAGATAAAAGTCCAAGAGAGCACACAGTTGCTAGGTGTTGGTGCGATTCCTCGTTCAATTCTTGTCATCTTGAAGGACGACCTTGTTGATGTCGTTAAAGCTGGAGATGATGTGATTGTTACTGGTCTCTTAACAGCAAGATGGTCTCCAGAGTTGAAGGATGTGCGTTGTGACCTTGATCCGGTATTAATAGCCAACAATGTAAGGAGAATCAATGAATTGAAGTCAGAAATTGATATTTCTGATGCCATCGTTATGAAATTCAAGCAGTTTTGGGATCACTTCAAAGAAACACCTTTAAAAGGAAGGAATGCTATTCTACGAGGAATCTGCCCACAAATATTTGGTCTTTTCACGGTCAAGCTGGCAGTTGCATTAACACTAATCGGAGGTGTACAACATGTCGATGCTTCTGGAACAAGGGTAAGGGGGGAGTCCCACTTGCTCTTGGTCGGTGATCCTGGCACTGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGCAATCGGTCTGTTATTACAACTGGGCTGGGAAGCACAAGTGCAGGATTGACTGTTACGGCCGTGAAGGATGGCGGTGAGTGGATGTTGGAAGCTGGCGCCCTTGTCTTGGCAGATGGAGGATTATGTTGCATAGATGAATTTGATAGTATGAGGGAACATGACAGAGCAACAATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACCCTCAGTACCAAAACAACAGTATTTGGCGCCACAAATCCGAAGGGACATTATGATCCTGATCAACCACTGTCTGTCAATACAACACTCTCTGGTCCTTTGTTAAGCAGATTTGATATAGTCCTGGTGCTCTTGGATACAAAGAATCCTGAATGGGATGCAGTAGTTTCAACTCATATTCTTTCTGAGGCAGAACCGGATAGAACATCCAATGATGATCTAGCAAATATCTGGCCTCTTTCTACACTCAAGAGGTATATACACTATTTGAAAGAAAAATTCAGACCAGTCCTTACGAGAGAGGCCGAAACAGTTATATCAAGCTATTATCAACTTCAAAGGAAATCGGCAACTGATAATGCAGCTAGGACAACTGTCCGCATGCTTGAAAGTTTGATTCGCCTAGCTCAAGCTCATGCAAGACTGATGTTCAGAAATGAGGTGACTCGGCTAGATGCCATCACAGCTATTTTATGCATAGAATCCTCCATGACTACCTCAGCTATTGTGGACTGCATTGGGAATGCTCTGCATTCCAATTTCACTGACAACCCTGATCAGGAATATGCAAAGCAAGAAAGGTTGATCCTAGAAAAATTGGGATGCAATGACAACTTTTCTGATATGAATAGGATGGAAGACTGA	2007	0.4335	MMATADDPEYWTKLMATYLLRPESDHSDQLRSIVSSPDFNLHFPLYVDFAELLDYDPRIAHLIFSQSNTYLQLFDEAALRVHRVVLGEMAGDDKNNVVEKKYIHVRINISGSPLECPETFPSIGRVRVQHRGILLTLKGIVIRSGAIKMHEGERKYMCHKCKNSFTVHPEVEARNSISLPSICPIQKPKPCGGTKFQYVENTIVCHDYQEIKVQESTQLLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGLLTARWSPELKDVRCDLDPVLIANNVRRINELKSEIDISDAIVMKFKQFWDHFKETPLKGRNAILRGICPQIFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTKTTVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSTHILSEAEPDRTSNDDLANIWPLSTLKRYIHYLKEKFRPVLTREAETVISSYYQLQRKSATDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTDNPDQEYAKQERLILEKLGCNDNFSDMNRMED	668

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre3g00229	668	FunFam	Probable DNA helicase MCM9	289	622	-	-
	Trre3g00229	668	Pfam	MCM AAA-lid domain	536	617	IPR041562	-
	Trre3g00229	668	SUPERFAMILY	Nucleic acid-binding proteins	42	262	IPR012340	-
	Trre3g00229	668	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	28	641	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Trre3g00229	668	ProSiteProfiles	MCM family domain profile.	311	514	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Trre3g00229	668	CDD	MCM9	314	617	-	-
	Trre3g00229	668	Gene3D	-	150	206	-	-
	Trre3g00229	668	Gene3D	-	286	623	IPR027417	-
	Trre3g00229	668	Pfam	MCM P-loop domain	313	516	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Trre3g00229	668	Gene3D	-	126	254	IPR012340	-
	Trre3g00229	668	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	321	627	IPR027417	-
	Trre3g00229	668	SMART	mcm	119	619	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Trre3g00229	668	SMART	AAA_5	353	502	IPR003593	GO:0016887
	Trre3g00229	668	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	410	424	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Trre3g00229	668	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	352	367	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Trre3g00229	668	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	438	451	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Trre3g00229	668	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	488	496	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Trre3g00229	668	Pfam	MCM OB domain	126	254	IPR033762	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre3g00229	Trre-Chr3	1506500	1519304	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre3g00229	15	642	Core DNA Replication Machinery Family	AT2G14050	74.326	0.0	972

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre3g00229	K10738		-	gmx:100776255	1108.2