LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre3g00228	ATGATGGCAACCGCCGATGATCCAGAATACTGGACGAAACTGATGGCCACTTACCTCCTCCGCCCCGAATCCGACCATTCCGATCAGCTCCGATCCATTGTTTCTTCTCCCGATTTCAATCTTCATTTTCCTCTCTACGTCGATTTTGCAGAATTGTTGGATTATGATCCTCGCATTGCTCATCTCATCTTTTCCCAATCCAATACATATCTTCAACTATTCGATGAAGCTGCTCTTAGGGTTCATAGAGTCGTGTTAGGAGAAATGGCTGGTGATGACAAGAATAATGTGGTCGAGAAAAAGTACATTCACGTTCGGATTAACATAAGTGGTTCTCCCCTTGAATGCCCTGAGACTTTTCCGAGCATAGGACGTGTACGGGTGCAACACCGAGGGATTCTTCTCACTCTCAAAGGGATAGTAATCAGGTCGGGAGCTATCAAGATGCATGAAGGAGAGAGGAAGTACATGTGCCACAAATGCAAAAATAGCTTCACAGTTCATCCTGAGGTGGAAGCTCGAAACTCCATATCATTACCTTCAATTTGTCCAATTCAGAAGCCAAAGCCCTGTGGGGGTACAAAATTCCAGTATGTAGAAAATACTATAGTGTGCCATGATTATCAGGAGATAAAAGTCCAAGAGAGCACACAGTTGCTAGGTGTTGGTGCGATTCCTCGTTCAATTCTTGTCATCTTGAAGGACGACCTTGTTGATGTCGTTAAAGCTGGAGATGATGTGATTGTTACTGGTCTCTTAACAGCAAGATGGTCTCCAGAGTTGAAGGATGTGCGTTGTGACCTTGATCCGGTATTAATAGCCAACAATGTAAGGAGAATCAATGAATTGAAGTCAGAAATTGATATTTCTGATGCCATCGTTATGAAATTCAAGCAGTTTTGGGATCACTTCAAAGAAACACCTTTAAAAGGTGGAAGGAATGCTATTCTACGAGGAATCTGCCCACAAATATTTGGTCTTTTCACGGTCAAGCTGGCAGTTGCATTAACACTAATCGGAGGTGTACAACATGTCGATGCTTCTGGAACAAGGGTAAGGGGGGAGTCCCACTTGCTCTTGGTCGGTGATCCTGGCACTGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGCAATCGGTCTGTTATTACAACTGGGCTGGGAAGCACAAGTGCAGGATTGACTGTTACGGCCGTGAAGGATGGCGGTGAGTGGATGTTGGAAGCTGGCGCCCTTGTCTTGGCAGATGGAGGATTATGTTGCATAGATGAATTTGATAGTATGAGGGAACATGACAGAGCAACAATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACCCTCAGTACCAAAACAACAGTATTTGGCGCCACAAATCCGAAGGGACATTATGATCCTGATCAACCACTGTCTGTCAATACAACACTCTCTGGTCCTTTGTTAAGCAGATTTGATATAGTCCTGGTGCTCTTGGATACAAAGAATCCTGAATGGGATGCAGTAGTTTCAACTCATATTCTTTCTGAGGCAGAACCGGATAGAACATCCAATGATGATCTAGCAAATATCTGGCCTCTTTCTACACTCAAGAGGTATATACACTATTTGAAAGAAAAATTCAGACCAGTCCTTACGAGAGAGGCCGAAACAGTTATATCAAGCTATTATCAACTTCAAAGGAAATCGGCAACTGATAATGCAGCTAGGACAACTGTCCGCATGCTTGAAAGTTTGATTCGCCTAGCTCAAGCTCATGCAAGACTGATGTTCAGAAATGAGGTGACTCGGCTAGATGCCATCACAGCTATTTTATGCATAGAATCCTCCATGACTACCTCAGCTATTGTGGACTGCATTGGGAATGCTCTGCATTCCAATTTCACTGACAACCCTGATCAGGAATATGCAAAGCAAGAAAGGTTGATCCTAGAAAAATTGGGATGCAATGACAACTTTTCTGATATGAATAGGATGGAAGACTGA	2010	0.4338	MMATADDPEYWTKLMATYLLRPESDHSDQLRSIVSSPDFNLHFPLYVDFAELLDYDPRIAHLIFSQSNTYLQLFDEAALRVHRVVLGEMAGDDKNNVVEKKYIHVRINISGSPLECPETFPSIGRVRVQHRGILLTLKGIVIRSGAIKMHEGERKYMCHKCKNSFTVHPEVEARNSISLPSICPIQKPKPCGGTKFQYVENTIVCHDYQEIKVQESTQLLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGLLTARWSPELKDVRCDLDPVLIANNVRRINELKSEIDISDAIVMKFKQFWDHFKETPLKGGRNAILRGICPQIFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTKTTVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSTHILSEAEPDRTSNDDLANIWPLSTLKRYIHYLKEKFRPVLTREAETVISSYYQLQRKSATDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTDNPDQEYAKQERLILEKLGCNDNFSDMNRMED	669

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre3g00228	669	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	322	628	IPR027417	-
	Trre3g00228	669	CDD	MCM9	315	618	-	-
	Trre3g00228	669	ProSiteProfiles	MCM family domain profile.	312	515	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Trre3g00228	669	Gene3D	-	286	624	IPR027417	-
	Trre3g00228	669	FunFam	Probable DNA helicase MCM9	289	623	-	-
	Trre3g00228	669	SUPERFAMILY	Nucleic acid-binding proteins	42	262	IPR012340	-
	Trre3g00228	669	SMART	AAA_5	354	503	IPR003593	GO:0016887
	Trre3g00228	669	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	28	642	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Trre3g00228	669	Gene3D	-	150	206	-	-
	Trre3g00228	669	SMART	mcm	119	620	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Trre3g00228	669	Gene3D	-	126	254	IPR012340	-
	Trre3g00228	669	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	411	425	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Trre3g00228	669	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	439	452	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Trre3g00228	669	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	353	368	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Trre3g00228	669	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	489	497	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Trre3g00228	669	Pfam	MCM P-loop domain	314	517	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Trre3g00228	669	Pfam	MCM OB domain	126	254	IPR033762	-
	Trre3g00228	669	Pfam	MCM AAA-lid domain	537	618	IPR041562	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre3g00228	Trre-Chr3	1506500	1519304	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre3g00228	15	643	Core DNA Replication Machinery Family	AT2G14050	74.209	0.0	967

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre3g00228	K10738		-	gmx:100776255	1103.58