Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00226 ATGGCACTTAATCATCATTCAAATAAGGATTTCAAAGTGACAGATGATGAACTTCTTCAATCATTCCTCTACAACAAAATTCACAATAAACCCTTGCCCAATTATATGACCATTCTCGAATACGATTTGTTTGGTACCACAAAGAATCCTTGTGACATTTGGGAAGAGTTTGCAGCTTCCCACTCATATAGTGGAAAAGACCTATATTTTTTCACTACCTTAAAGAAGAAATCAGCCAATAGCACGCGCATGGATCGTACTATTGGAAATGGTTCATGGGAAAGTGAAGATAGCGGAAATAGTATATTCGCTAAAAATACAAACCAACTCCTTGGTATAAAAAAACGATATCGCTTTGAAACAAGTAAGGTTGATCCAGAATATGGTAGATGGATCTTGCACCAATATAGCCTTGACCAATCTTTGATAAGCAATCCTTCGGACAATAATTACGTTCTATGTAGATTTAGAAAGAATTTAAAACTGAATCAACAAAATACAGGAACAAGAATAAATCAGCAATCCAATTCACACAAAAATTCAAGAGCCAAGAATGCTGGACAAAGTAAACTAAGAAAAACCGTTGTTCCTCCATGTGCGGCGACAACCACCATATCTGGAAGTAATACTCTGTTGAGTAAATATACAACTTATGCACAAGTAAACGAATCAAATGGTGAACATAACAAGACAAATGTGGTTGATGAAGAGTCTGCATACAAACAAGAAGGTATGGAAAGTATTTGGCCAGAAAACACCATCGTTCTTGCACTCGAATCTACGCCTAAATCTGAAAACAATAGTGAATTTAACAAAGAAGATGTTGAATGCATTATGAACAAAGAAGATGATGGTAATGTCATTATAAACACAGAAGAAGATGATAGCAAAGAAGATGAGGGTGATGGCACTATGTCTTGGCCTGAGTATTTTTCACAAGAGTTAATAAACAAGAATGAAGGTTGTCTGATGAGAGAGGAAAATGTCACAATGATTTCCAATAATTTTAATAAAGAATTGTTGCTGGAAAGTATGATCAATATTAAGTAA 1050 0.3486 MALNHHSNKDFKVTDDELLQSFLYNKIHNKPLPNYMTILEYDLFGTTKNPCDIWEEFAASHSYSGKDLYFFTTLKKKSANSTRMDRTIGNGSWESEDSGNSIFAKNTNQLLGIKKRYRFETSKVDPEYGRWILHQYSLDQSLISNPSDNNYVLCRFRKNLKLNQQNTGTRINQQSNSHKNSRAKNAGQSKLRKTVVPPCAATTTISGSNTLLSKYTTYAQVNESNGEHNKTNVVDEESAYKQEGMESIWPENTIVLALESTPKSENNSEFNKEDVECIMNKEDDGNVIINTEEDDSKEDEGDGTMSWPEYFSQELINKNEGCLMREENVTMISNNFNKELLLESMINIK 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00226 349 MobiDBLite consensus disorder prediction 165 188 - -
Trre3g00226 349 Gene3D NAC domain 14 163 IPR036093 GO:0003677|GO:0006355
Trre3g00226 349 ProSiteProfiles NAC domain profile. 5 159 IPR003441 GO:0003677|GO:0006355
Trre3g00226 349 PANTHER NAC TRANSCRIPTION FACTOR 56 11 213 - -
Trre3g00226 349 MobiDBLite consensus disorder prediction 165 195 - -
Trre3g00226 349 SUPERFAMILY NAC domain 11 157 IPR036093 GO:0003677|GO:0006355
Trre3g00226 349 Pfam No apical meristem (NAM) protein 10 138 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00226 Trre-Chr3 1496135 1498634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00226 11 245 NAC Transcription Factor Family AT3G15510 27.419 6.52e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre3g00226 NAM 4.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00226 - - tpra:123896066 347.436