Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00222 ATGAAGGAAGAAGAAGAAGAATCAACGGTGAAGATGGAGTGGTTAACTTCCATTGATTCAACAACTCTCTCTCACTCTGAACTTCAAGCACTTTCTCTCTCTTCTCTTTCTTCCTTCGACCTAAAATCTACGCGCCAAATCGTCACTCCCAAAATCGATCCTTCAACTTTCAATCACAGCGCCGGTTCTCACCGTCAAACCTACTCCCGATCTCACCGTCGTTGTCGTGCACCGCCACTTCTTCCAACTCCTGTTCTTCCCTCCGACCACCGTATCATCGTTGATTACCTCAAACAGTTTATCAGAGAAGATCCGAAGTTCGATCAGGTTGAGCTTCTTCAGCCTGTAGTTCCTTCAATTTCGCCGCCGGTGATATTTTCCGGTGAAGTGAGGAAGAGGAAGAGAGGGAGGAAACCTAAAATGAAGGTGCATTTGGATGACTGTTATAGAGGGATGGAGATTGTGAACAAGAATGGTGTTGCTGTTGATTTGAATGTGTTGTCGATGGTGGAGCATCCGTTTGCAGCGGAGATTGCAAGAAGGACGGAAGGGTTGAGTAAGGAAGAGGAGTTGTTAGGGTTTTTGAGTGATTTGGTTGGTCAATGGGGAAGTAGGAGGAGGAAGAGGAGGATTGTTGATGCTGCTGATTTTGGAGATGTGTTGCCTCTTGGATGGAAGCTTCTTCTTAGTTTGAAGAGGAAAGATGGTCGTGCTTGGATCTATTGCCGTAGATATATAAGCCCTAGTGGACAGCAGTTTGTGTCTTGCAAAGAAGTTTCTTCCTATTTGCAGTCTCGATTTGGTCACTCTGATTTACAGTTACAAATCAGTCATAGGAGTGAAAACATACTTCAAGAACAGAGAGTGACTACTGAAAATTCTGCAGGTGTTGCTCACGAGGAGCAGGATCAACGGCAGATTGTTGCCACTAACTCGGATGTGTCTGGTTTGTCCGCCTCTAATGAACGATTGAAAGAAATGTCCTTGTTGGAGATGGAGAACCTTGCAGATGTGCTAATACATGATCTGTTTGAATGTCAAAAGTGCAGCATGACCTTTGATGAGAAGGATGCGTACTTGGAGCACCTGTTGTCTATTCATCAGAAGACGACGAGGCGGTATCGACTTGGCTCATCTGTTTCAGATGGAGTTATAATTAAAGATGGGAAGTTTGAGTGTCAGTTCTGTCATAAAGTGTTTCTGGAAAAGCGTCGCTACAATAGTCACGTTGGGATACATGTTAGGAATTATTTGAGGAAAGCTGAAGATTTGCCGGGTCAGCCTAATAATGTCTTGAGAGCAGAAGAGTCTCCAGTCACAGATGAGATGCCTTCAAGGATCTCTAAGATGGATGCCCTCATCGAAATTGCTCAAAACTCTATTGTGGAGGATTCTGTCATGGAACCATGTTCTTCTAAGCTGAATACTATTGATGTTTCAGAAATTGCGGCTGGTGACTTAGATGTAGACATAAATGTTGAGTCTCCGATCAGTGAACAACAAATGGAAGAGAGCTTGATTGACCCAAATGCAGCTCGTGATTTAAATCAGCAAGATAGTCCTCGTTTACCCATGGGTGGAACAATAGAGGAAATTGACAACGATAACCGAGTTATTAATGCAAAGATGTCTAGTTTTCTAGATAACACAGGCTTGTTTTCTGTAAATAATAAAAATGGTGATGCACCTGATACTTCTAAAGGAAAAGGTGATGCGGCACTGACTGTTGAGGGATTTGATCATTCTGTGATTGATCTGCAAGGATTTTCTGAAAGCCCGTTGCTTCCTTCATCTGGGAATCACATAAAACCTGGATATGAGAAGAGTGAAAATTCTGGTTGCATTAATACTAAGGGGGGTCTTAAACTTGACGAAAACAATAATTATAAGAGTGACTTGAAAATTGGTTTATATGGCTGCAAGGATGAACCCGGTGTTGCTAATGTTCAAGTGACAGCAATGCCAACCTCTAAAGAAAATGTGATCCAATCTATGGTTTCTAACCCCTCTGTATCCCCAGAACAATCTATGGATTCTTTTTCTGCATTCAGCTCAGACAAGGGGTTCCAGGAATTGAGGTTAGAAGATATTGGTTCTCTTGAGTATGATTTTGCAAGTGTTCAAGATGTGTCAGCTGACTTGGCAAATAACATAGTGGTGCAAGGGACATGTGCATCACAAGAAGTTATGTTAAATGTGGATGACAATAATCTGCTCACAACCACGTGTGTATGGTGTGGAATAGAGTTTAACCACGATGCTGTTAATTCTGAAATACAATCAGATTCTGTTGGATTCATGTGTCCAGTTTGCAAGGCAAAAATATCTGGTCAAATCAATGTGTTGGACAGTGGATCACCAAATGCTGGCCATCTTTAG 2379 0.4229 MKEEEEESTVKMEWLTSIDSTTLSHSELQALSLSSLSSFDLKSTRQIVTPKIDPSTFNHSAGSHRQTYSRSHRRCRAPPLLPTPVLPSDHRIIVDYLKQFIREDPKFDQVELLQPVVPSISPPVIFSGEVRKRKRGRKPKMKVHLDDCYRGMEIVNKNGVAVDLNVLSMVEHPFAAEIARRTEGLSKEEELLGFLSDLVGQWGSRRRKRRIVDAADFGDVLPLGWKLLLSLKRKDGRAWIYCRRYISPSGQQFVSCKEVSSYLQSRFGHSDLQLQISHRSENILQEQRVTTENSAGVAHEEQDQRQIVATNSDVSGLSASNERLKEMSLLEMENLADVLIHDLFECQKCSMTFDEKDAYLEHLLSIHQKTTRRYRLGSSVSDGVIIKDGKFECQFCHKVFLEKRRYNSHVGIHVRNYLRKAEDLPGQPNNVLRAEESPVTDEMPSRISKMDALIEIAQNSIVEDSVMEPCSSKLNTIDVSEIAAGDLDVDINVESPISEQQMEESLIDPNAARDLNQQDSPRLPMGGTIEEIDNDNRVINAKMSSFLDNTGLFSVNNKNGDAPDTSKGKGDAALTVEGFDHSVIDLQGFSESPLLPSSGNHIKPGYEKSENSGCINTKGGLKLDENNNYKSDLKIGLYGCKDEPGVANVQVTAMPTSKENVIQSMVSNPSVSPEQSMDSFSAFSSDKGFQELRLEDIGSLEYDFASVQDVSADLANNIVVQGTCASQEVMLNVDDNNLLTTTCVWCGIEFNHDAVNSEIQSDSVGFMCPVCKAKISGQINVLDSGSPNAGHL 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00222 792 Pfam Methyl-CpG binding domain 220 266 IPR001739 GO:0003677
Trre3g00222 792 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 4 584 IPR037472 -
Trre3g00222 792 SUPERFAMILY DNA-binding domain 217 272 IPR016177 GO:0003677
Trre3g00222 792 ProSitePatterns Zinc finger C2H2 type domain signature. 346 367 IPR013087 -
Trre3g00222 792 ProSitePatterns Zinc finger C2H2 type domain signature. 393 413 IPR013087 -
Trre3g00222 792 ProSiteProfiles Zinc finger C2H2 type domain profile. 391 418 IPR013087 -
Trre3g00222 792 SMART c2h2final6 344 367 IPR013087 -
Trre3g00222 792 SMART c2h2final6 391 413 IPR013087 -
Trre3g00222 792 Gene3D - 201 311 - -
Trre3g00222 792 Gene3D Classic Zinc Finger 317 418 - -
Trre3g00222 792 MobiDBLite consensus disorder prediction 52 73 - -
Trre3g00222 792 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 211 283 IPR001739 GO:0003677
Trre3g00222 792 ProSiteProfiles Zinc finger C2H2 type domain profile. 344 372 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00222 Trre-Chr3 1474244 1477833 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre3g00222 MBD 9.9e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00222 - - gmx:100526917 906.746