Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00205 ATGTCATCTTCAATTCTTGTAATCCAAATTCCAATAGCAATGGATTCTGTTGTGACGCAAAAAATGCTTTTCAAACCTCTCAATCTGAATTTCCCTTCAATCAGAGCCGGCATCCAAAAGCAGCTGAACCACCGCGTTCTCTTCCACAACTCTGTTATTCCGTTGCGGTGCTCAGCCTCAACTCCTTCGACTTCTTCTGATGATGCTATTGTTCTCAATGTTCGGGGAATGATGTGTGAGGGATGTGCATCTAGTGTAAAAAAACTTCTAGAAACTCAACCACAAGTGTTATCTGCTACTGTGAATCTAACATCAGAGACAGCACTAGTTTCCCTATCGCCTTTGTTACCTGAAGAGAAAACTTCACCAAATTGGCAAAAGGAGTTAGGAGAAACACTTGCTCACCATTTAACTACATGCGGTTTTACTTCCGCCCTTAGAGGTATACAGTATACTTTCATCTTCCTCGGCATACTTTGA 480 0.4167 MSSSILVIQIPIAMDSVVTQKMLFKPLNLNFPSIRAGIQKQLNHRVLFHNSVIPLRCSASTPSTSSDDAIVLNVRGMMCEGCASSVKKLLETQPQVLSATVNLTSETALVSLSPLLPEEKTSPNWQKELGETLAHHLTTCGFTSALRGIQYTFIFLGIL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00205 159 ProSiteProfiles Heavy-metal-associated domain profile. 68 138 IPR006121 GO:0046872
Trre3g00205 159 Pfam Heavy-metal-associated domain 71 114 IPR006121 GO:0046872
Trre3g00205 159 Gene3D - 68 150 - -
Trre3g00205 159 FunFam Copper-transporting ATPase PAA1, chloroplastic 68 146 - -
Trre3g00205 159 ProSitePatterns Heavy-metal-associated domain. 74 103 IPR017969 GO:0046872
Trre3g00205 159 SUPERFAMILY HMA, heavy metal-associated domain 69 114 IPR036163 GO:0046872
Trre3g00205 159 CDD HMA 71 120 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00205 Trre-Chr3 1373277 1374589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00205 63 155 Primary Pumps ATPases AT4G33520 56.989 2.01e-29 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00205 K17686 - mtr:11435142 175.637