Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00197 ATGGGGTTTTACCTTTTTGTCCTTCAACTTATTACTTTTTCAGTTCTTGCTATAGCTCAAGAAGAACCTAAAGGGAATTCCAATGAGAATAAAAACAATAGCAATTCCAATCTTTTATTATTAATTCTCAATGTGGTTCTTCTTCTAGCAATAATATTGCTATTGATTCTTTACTACAACACATCAAAAAAACTCAACAGAATAGTGAAAGGACACATTTACACATCTCATGAACAAGAGAAAGATGTTGAAACAAGTATTAATGTGAAGAGAGTTGAGATAGGAGAAGGGACAACAATGATGACAGTAGAAGAGAGAAAAGAGTTAATGTTTTTCAATGATGAGACAAAATTTCAAATGGGAGAACTTCTTAGAGCTTCTGCTGAAGCATTAGGACATGGAATTATGGGGAATAGTTATAAGGCTATGTTGAATAATGGACATAATATTGTTGTGAAGAGGTTAAGGGACTTGAAACCATTTACTAAGGAGGAATTTGCAAAGATAGTGAAAATTATTGCTGATCTTAAACATCCTAATTTGTTGCCTTTGCTTGCTTATTACCATTCAAGAGATGAGAAGCTTATGCTCTATAGATATGCTCAGAATGGAAATCTTTTCTCTAGACTTCATGATGGAAGAGATGGAAACAGGGTTCCATTCAATTGGAACTCAAGATTATTAGTGGCAAGAGGTGTGGCTAGAGCATTAGAGTACCTTCATCTCAACAACAAGATCCATAACATTGTCCCTCATGGAAATCTAAAGTCTTCAAATGTTCTATTTGATGAAAAAGATTCAGTTCTTGTATCTGACTTTAGTCTTGCATCCTTCATAGCACAGCCAATTGCAGCTCAACATATGGTTGTTTACAAATCACCTGAATATGGATCTGCAAGAAAAGTTACAATGCAATCAGATGTTTGGAGCTATGGATCACTTTTAATAGAAATTCTAACAGGGAAAGTTTCTATGTGCTCAGCTCCACAAGGGACTAATGGTGTGGATCTTTGTAGTTGGGTTAATAGAGCTGTGAGAGAAGAATGGACTGCTGAGATATTTGACAAAGAAATATCTTGTCAAAAGAGTGCTCTTCCAGGGATGTTAAGGTTGTTGCAGATAGCAATGAGATGCATTGAGAGGTTTCCTGAGAAACGTCCTGAGATGAAAGAGGTAGTTAGAGAAGTGGAGAAAATACAACAAGTACATTTGATGTCTGAAGATGAGGACGATGTTTCTTGTGATAGGTCTCTAACTGATGATTCATTTTCAACTAGTAACTCAGGGATTTTTATTGGAGATTAA 1305 0.354 MGFYLFVLQLITFSVLAIAQEEPKGNSNENKNNSNSNLLLLILNVVLLLAIILLLILYYNTSKKLNRIVKGHIYTSHEQEKDVETSINVKRVEIGEGTTMMTVEERKELMFFNDETKFQMGELLRASAEALGHGIMGNSYKAMLNNGHNIVVKRLRDLKPFTKEEFAKIVKIIADLKHPNLLPLLAYYHSRDEKLMLYRYAQNGNLFSRLHDGRDGNRVPFNWNSRLLVARGVARALEYLHLNNKIHNIVPHGNLKSSNVLFDEKDSVLVSDFSLASFIAQPIAAQHMVVYKSPEYGSARKVTMQSDVWSYGSLLIEILTGKVSMCSAPQGTNGVDLCSWVNRAVREEWTAEIFDKEISCQKSALPGMLRLLQIAMRCIERFPEKRPEMKEVVREVEKIQQVHLMSEDEDDVSCDRSLTDDSFSTSNSGIFIGD 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00197 434 Pfam Protein tyrosine and serine/threonine kinase 129 395 IPR001245 GO:0004672|GO:0006468
Trre3g00197 434 SUPERFAMILY Protein kinase-like (PK-like) 129 401 IPR011009 -
Trre3g00197 434 ProSiteProfiles Protein kinase domain profile. 125 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00197 434 Gene3D Transferase(Phosphotransferase) domain 1 201 422 - -
Trre3g00197 434 SMART serkin_6 125 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00197 434 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 33 401 IPR046959 -
Trre3g00197 434 Gene3D Phosphorylase Kinase; domain 1 91 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00197 Trre-Chr3 1315732 1317614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00197 27 400 Receptor kinase-like Gene Family AT1G68400 38.642 1.64e-74 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre3g00197 PK_Tyr_Ser-Thr 3.3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00197 - - mtr:11421603 736.873