Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00192 ATGGCAGCTGCAACATCTGGTGCTGTGTTGAATGGTTTGGGATCTTCCTTCTTAAGTGGTGGAAAGAGGAGCCAAACATTGCTAGCTACTGCTATTGGAAGCAAAGTTAGTGTTGCAGCTGCTAGTCCTAAAAGACTTATTGTTGCTGCTGCTGCTTCTGCACCAAAGAAGTCATGGATCCCTGGTGTTAGATTCGGTGGAAATCTCGTCGATCCAGAATGGCTCGATGGATCGCTACCAGGTGACTTTGGTTTTGACCCACTAGGACTAGGCAAGGACCCAGCATTTCTTAAATGGTACAGAGAAGCTGAGCTCATTCATGGAAGGTGGGCAATGGCTGCAGTCCTAGGGATCTTTGTTGGTCAGGCATGGAGTGGAGTTCCATGGTTTGAGGCCGGGGCTGACCCGAATGCAATTGCTCCATTCTCCTTTGGTACACTTCTAGGAACTCAATTGCTTCTCATGGGTTGGGTAGAGAGCAAGAGATGGGTTGATTTCTTCAACCCGGACTCACAGTCGGTTGAATGGGCCACTCCATGGTCAAAAACCGCCGAGAACTTTGCAAATTCAACCGGAGAACAAGGCTATCCAGGAGGAAAATTCTTCGATCCATTGTCCCTTGCTGGCACAATTGAAAATGGAGTTTACATTCCAGATACAGAGAAGCTAGAGAGATTGAAATTGGCTGAGATTAAGCATGCTAGGCTTGCTATGTTGGCTATGCTGATTTTCTACTTTGAAGCTGGACAAGGGAAAACTCCCCTTGGTGCTCTTGGTTTGTAA 783 0.4713 MAAATSGAVLNGLGSSFLSGGKRSQTLLATAIGSKVSVAAASPKRLIVAAAASAPKKSWIPGVRFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANSTGEQGYPGGKFFDPLSLAGTIENGVYIPDTEKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00192 260 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 54 258 IPR001344 GO:0009765|GO:0016020
Trre3g00192 260 Gene3D Chlorophyll a/b binding protein domain 72 259 - -
Trre3g00192 260 FunFam Chlorophyll a-b binding protein, chloroplastic 72 259 - -
Trre3g00192 260 SUPERFAMILY Chlorophyll a-b binding protein 69 260 - -
Trre3g00192 260 Pfam Chlorophyll A-B binding protein 72 248 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00192 Trre-Chr3 1294996 1296099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00192 1 260 Chloroplast and Mitochondria Gene Families AT1G15820 83.077 4.10e-155 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00192 K08917 - gmx:100500118 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00192 3 1294996 1296099 Trre3g00192 3 1294996 1296099 ECH