Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00187 ATGGATGTTTTATTATCCTTAAACACATCAAGCCTAATCAACTTTTCAAAACCATATCAATATCATAACCTTCCAACACTCTCAAATAAACAACAAATTAAACAACCTAGTATGAAGTTTTCTTTTTCATGCAGAGCCACAAACACAAAAAATGTTCCAATTCAAGAGGTTGATGATGATGATGATGGGAATTTCTACAAGGTACTATGTTTGAGTTCTAAAAGTGCAACAATGGATGACATAAAAAGAGCTTATAGAACAATGGCTCTTCAATATCATCCTGATTTGTGTCATGATCGTTTGAAGAAAGAAGAATCAACGAGGATGTTTGTACAAGTGAATGCAGCTTATAAGACTCTGTCAAATCCAGAGCTAAAAGAAGAGTATGATTATGAAATTGGTTTGGGTTTGAGAAGAAGTAGATGGATGGAACAAGTGGTTGAGTTGAAAAGAAGGTCTCATAAACGTAAGGAAGGATCATGGGGTAGTAGAATAAGAGCCAAAAACAATATCAACAAAGATCATCATTAA 531 0.3371 MDVLLSLNTSSLINFSKPYQYHNLPTLSNKQQIKQPSMKFSFSCRATNTKNVPIQEVDDDDDGNFYKVLCLSSKSATMDDIKRAYRTMALQYHPDLCHDRLKKEESTRMFVQVNAAYKTLSNPELKEEYDYEIGLGLRRSRWMEQVVELKRRSHKRKEGSWGSRIRAKNNINKDHH 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00187 176 Pfam DnaJ domain 64 130 IPR001623 -
Trre3g00187 176 Gene3D DnaJ domain 54 157 IPR036869 -
Trre3g00187 176 CDD DnaJ 64 122 IPR001623 -
Trre3g00187 176 PRINTS DnaJ domain signature 105 125 IPR001623 -
Trre3g00187 176 PRINTS DnaJ domain signature 67 85 IPR001623 -
Trre3g00187 176 PRINTS DnaJ domain signature 85 100 IPR001623 -
Trre3g00187 176 SUPERFAMILY Chaperone J-domain 61 133 IPR036869 -
Trre3g00187 176 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 25 171 - -
Trre3g00187 176 SMART dnaj_3 63 125 IPR001623 -
Trre3g00187 176 ProSiteProfiles dnaJ domain profile. 64 133 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00187 Trre-Chr3 1264017 1264547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00187 66 130 C2H2 Transcription Factor Family AT1G74250 38.806 1.87e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00187 - - tpra:123910633 315.464