Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00183 ATGAGTCAGGTTTTTAGTGATGGAGCTGTGGCAAGAGCCATGGATACAGAAGAAATAAATAGTAATCCAACTTCACGTAGACATGGTGCTGATGTTCTTCCACATATTCACAAAGTTTCAAGTCCTCCTAAGCAAACACTTTTCCAAGATTTCAAACATAACTTCAATGAAACTTTCTTCTCAGATGACCCTTTTGGCAAGTTTAAGGACCAAAAAGGATCAAGAAAGTTTGTTCTTGGATTACAATCTGTTTTTCCAATTTTTGATTGGGCAAGAGGTTACAACCTTAAAAGTTTTAAGGGTGATTTGATTTCTGGACTAACCATTGCTAGTCTTTGCATTCCACAGGATATTGCATATGCAAAGCTTGCACATTTGTCACCTGAATATGGACTTTATACTAGTTTTGTTGCACCTCTTGTGTATGCTTTCATGGGAAGTTCAAGAGATATTGCCATAGGACCAGTAGCTGTGGTGTCCCTCTTGCTAGGAACCTTGCTTTCAGATGAGATCAAAGATGTCAAAAGTCCTGAATACCTTCGTCTCGCATTTACTGCAACTTTCTTTGCAGGACTTACTCAAATGCTACTTGGACTTTTAAGGCTTGGTTTCTTGATTGATTTTCTATCTCATGCTGCAATTGTTGGATTCATGGGTGGAGCTGCCATTACTATTGCACTCCAACAACTTAAAGGTCTTCTTGGCGTAAAGGACTTCACTACGAAAACTGATATTATTTCGGTCATGAGATCCGTTTTTAGTGCCGCCCACCATGGGTGGAATTGGGAGACAATATTAATTGGACTATCATTCTTGGCTTTCCTTCTCACAACCAAATATATTGCTAAGAAGAAAAAGAACCTCTTTTGGGTGGCTGCAATATCTCCTATGATATGTGTTATAGTGTCTACTTTTTGTGTCTACATTACAAGGGCAGACAAGAAAGGAGTAGCAATTGTGAGACATATTAAAAAGGGTGTGAATCCAGCATCTGCTAGTGAAATATATTTCAGTGGACATTATTTAAGTGCTGGTATTAGGATTGGTTTGATTTCTGGTATGGTAGCACTCACGGAAGCTGTGGCCATTGGAAGAACATTTGCTGCTATGAAAGACTATTCAATTGATGGTAACAGAGAAATGGTGGCATTAGGAACAATGAATGTTATTGGTTCCATGACATCTTGTTATGTTGCTACAGGATCGTTTTCGCGCTCAGCTGTGAACTATATGGCTGGTTGTAAAACTGCTGTATCAAACATAGTTATGTCCATTGTGTTATTGTTAACTCTGTTAGTGATTACGCCGCTATTCAAGTACACTCCAAATGCAGTGCTTGCCTCAATTATCATAGCTGCTGTGTTGAATCTCATTGACATTAAAGCAGCTATTCTTCTTTGGAAGATTGATAAATTTGATTTTGTAGCATGCATGGGAGCCTTCTTTGGTGTCATCTTCAAAAGTGTTGAAATTGGCCTTCTAATCGCGGTAGCAATATCTTTTGCCAAAATTCTTTTACAAGTTACAAGGCCAAAGACTGCAGTACTTGGGAAGCTTCCAGGAACAACGGTTTATAGGAACATCCTACAATATCCCAAAGCAGCTCAGATTCCCGGCATGCTGATTGTCAGGGTTGATTCTGCAATCTACTTCTCAAACTCCAACTACATCAAGGACAGAATATTGAAGTGGCTCACTGATGAAGAGATTATAAGGACATCAAGTGAATATCCAAGTATTCAGTATCTCATCGTTGAAATGTCACCTGTTACTGATATTGACACTAGTGGCATCCATGCCTTTGAAGATTTACTTAAGAGCCTCAAGAAAAAGGATGTTCAGCTTCTCGTGGCGAACCCGGGACCAATTGTAGTTGAGAAGTTCCATGCATCAAAGTTAACGGGCTTAATCGGAGAAGATAAAATATTTCTAACAGTAGGTGATGCTGTTTCAACTTTTGGTGGAAAGGGTACAGATTCATGA 1983 0.3913 MSQVFSDGAVARAMDTEEINSNPTSRRHGADVLPHIHKVSSPPKQTLFQDFKHNFNETFFSDDPFGKFKDQKGSRKFVLGLQSVFPIFDWARGYNLKSFKGDLISGLTIASLCIPQDIAYAKLAHLSPEYGLYTSFVAPLVYAFMGSSRDIAIGPVAVVSLLLGTLLSDEIKDVKSPEYLRLAFTATFFAGLTQMLLGLLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGLLGVKDFTTKTDIISVMRSVFSAAHHGWNWETILIGLSFLAFLLTTKYIAKKKKNLFWVAAISPMICVIVSTFCVYITRADKKGVAIVRHIKKGVNPASASEIYFSGHYLSAGIRIGLISGMVALTEAVAIGRTFAAMKDYSIDGNREMVALGTMNVIGSMTSCYVATGSFSRSAVNYMAGCKTAVSNIVMSIVLLLTLLVITPLFKYTPNAVLASIIIAAVLNLIDIKAAILLWKIDKFDFVACMGAFFGVIFKSVEIGLLIAVAISFAKILLQVTRPKTAVLGKLPGTTVYRNILQYPKAAQIPGMLIVRVDSAIYFSNSNYIKDRILKWLTDEEIIRTSSEYPSIQYLIVEMSPVTDIDTSGIHAFEDLLKSLKKKDVQLLVANPGPIVVEKFHASKLTGLIGEDKIFLTVGDAVSTFGGKGTDS 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00183 660 Gene3D STAS domain 510 654 IPR036513 -
Trre3g00183 660 Pfam STAS domain 531 649 IPR002645 -
Trre3g00183 660 ProSiteProfiles STAS domain profile. 530 653 IPR002645 -
Trre3g00183 660 ProSitePatterns SLC26A transporters signature. 128 149 IPR018045 GO:0008271|GO:0008272
Trre3g00183 660 CDD STAS_SulP_like_sulfate_transporter 531 646 - -
Trre3g00183 660 SUPERFAMILY SpoIIaa-like 532 654 IPR036513 -
Trre3g00183 660 FunFam Sulfate transporter 31 510 656 - -
Trre3g00183 660 Pfam Sulfate permease family 99 478 IPR011547 GO:0016020
Trre3g00183 660 PANTHER SULFATE TRANSPORTER 45 651 IPR001902 GO:0016020|GO:0055085
Trre3g00183 660 NCBIfam sulfate permease 86 649 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00183 Trre-Chr3 1239006 1242467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00183 15 660 Inorganic Solute Cotransporters AT1G22150 70.943 0.0 910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00183 K17470 - gmx:100784124 1009.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00183 3 1239006 1242467 Trre3g00183 3 1239006 1242467 ECH