Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00182 ATGAGTCAGGTTTTTAGTGATGGAGCTGTGGCAAGAGCCATGGATACAGAAGAAATAAATAGTAATCCAACTTCACGTAGACATGGTGCTGATGTTCTTCCACATATTCACAAAGTTTCAAGTCCTCCTAAGCAAACACTTTTCCAAGATTTCAAACATAACTTCAATGAAACTTTCTTCTCAGATGACCCTTTTGGCAAGTTTAAGGACCAAAAAGGATCAAGAAAGTTTGTTCTTGGATTACAATCTGTTTTTCCAATTTTTGATTGGGCAAGAGGTTACAACCTTAAAAGTTTTAAGGGTGATTTGATTTCTGGACTAACCATTGCTAGTCTTTGCATTCCACAGGATATTGCATATGCAAAGCTTGCACATTTGTCACCTGAATATGGACTTTATACTAGTTTTGTTGCACCTCTTGTGTATGCTTTCATGGGAAGTTCAAGAGATATTGCCATAGGACCAGTAGCTGTGGTGTCCCTCTTGCTAGGAACCTTGCTTTCAGATGAGATCAAAGATGTCAAAAGTCCTGAATACCTTCGTCTCGCATTTACTGCAACTTTCTTTGCAGGACTTACTCAAATGCTACTTGGACTTTTAAGGCTTGGTTTCTTGATTGATTTTCTATCTCATGCTGCAATTGTTGGATTCATGGGTGGAGCTGCCATTACTATTGCACTCCAACAACTTAAAGGTCTTCTTGGCGTAAAGGACTTCACTACGAAAACTGATATTATTTCGGTCATGAGATCCGTTTTTAGTGCCGCCCACCATGGGGCTAAGAAGAAAAAGAACCTCTTTTGGGTGGCTGCAATATCTCCTATGATATGTGTTATAGTGTCTACTTTTTGTGTCTACATTACAAGGGCAGACAAGAAAGGAGTAGCAATTGTGAGACATATTAAAAAGGGTGTGAATCCAGCATCTGCTAGTGAAATATATTTCAGTGGACATTATTTAAGTGCTGGTATTAGGATTGGTTTGATTTCTGGTATGGTAGCACTCACGGAAGCTGTGGCCATTGGAAGAACATTTGCTGCTATGAAAGACTATTCAATTGATGGTAACAGAGAAATGGTGGCATTAGGAACAATGAATGTTATTGGTTCCATGACATCTTGTTATGTTGCTACAGGATCGTTTTCGCGCTCAGCTGTGAACTATATGGCTGGTTGTAAAACTGCTGTATCAAACATAGTTATGTCCATTGTGTTATTGTTAACTCTGTTAGTGATTACGCCGCTATTCAAGTACACTCCAAATGCAGTGCTTGCCTCAATTATCATAGCTGCTGTGTTGAATCTCATTGACATTAAAGCAGCTATTCTTCTTTGGAAGATTGATAAATTTGATTTTGTAGCATGCATGGGAGCCTTCTTTGGTGTCATCTTCAAAAGTGTTGAAATTGGCCTTCTAATCGCGGTAGCAATATCTTTTGCCAAAATTCTTTTACAAGTTACAAGGCCAAAGACTGCAGTACTTGGGAAGCTTCCAGGAACAACGGTTTATAGGAACATCCTACAATATCCCAAAGCAGCTCAGATTCCCGGCATGCTGATTGTCAGGGTTGATTCTGCAATCTACTTCTCAAACTCCAACTACATCAAGGACAGAATATTGAAGTGGCTCACTGATGAAGAGATTATAAGGACATCAAGTGAATATCCAAGTATTCAGTATCTCATCGTTGAAATGTCACCTGTTACTGATATTGACACTAGTGGCATCCATGCCTTTGAAGATTTACTTAAGAGCCTCAAGAAAAAGGATGTTCAGCTTCTCGTGGCGAACCCGGGACCAATTGTAGTTGAGAAGTTCCATGCATCAAAGTTAACGGGCTTAATCGGAGAAGATAAAATATTTCTAACAGTAGGTGATGCTGTTTCAACTTTTGGTGGAAAGGGTACAGATTCATGA 1917 0.3933 MSQVFSDGAVARAMDTEEINSNPTSRRHGADVLPHIHKVSSPPKQTLFQDFKHNFNETFFSDDPFGKFKDQKGSRKFVLGLQSVFPIFDWARGYNLKSFKGDLISGLTIASLCIPQDIAYAKLAHLSPEYGLYTSFVAPLVYAFMGSSRDIAIGPVAVVSLLLGTLLSDEIKDVKSPEYLRLAFTATFFAGLTQMLLGLLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGLLGVKDFTTKTDIISVMRSVFSAAHHGAKKKKNLFWVAAISPMICVIVSTFCVYITRADKKGVAIVRHIKKGVNPASASEIYFSGHYLSAGIRIGLISGMVALTEAVAIGRTFAAMKDYSIDGNREMVALGTMNVIGSMTSCYVATGSFSRSAVNYMAGCKTAVSNIVMSIVLLLTLLVITPLFKYTPNAVLASIIIAAVLNLIDIKAAILLWKIDKFDFVACMGAFFGVIFKSVEIGLLIAVAISFAKILLQVTRPKTAVLGKLPGTTVYRNILQYPKAAQIPGMLIVRVDSAIYFSNSNYIKDRILKWLTDEEIIRTSSEYPSIQYLIVEMSPVTDIDTSGIHAFEDLLKSLKKKDVQLLVANPGPIVVEKFHASKLTGLIGEDKIFLTVGDAVSTFGGKGTDS 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00182 638 ProSiteProfiles STAS domain profile. 508 631 IPR002645 -
Trre3g00182 638 Pfam STAS domain 509 627 IPR002645 -
Trre3g00182 638 Gene3D STAS domain 488 632 IPR036513 -
Trre3g00182 638 SUPERFAMILY SpoIIaa-like 510 632 IPR036513 -
Trre3g00182 638 ProSitePatterns SLC26A transporters signature. 128 149 IPR018045 GO:0008271|GO:0008272
Trre3g00182 638 CDD STAS_SulP_like_sulfate_transporter 509 624 - -
Trre3g00182 638 Pfam Sulfate permease family 99 258 IPR011547 GO:0016020
Trre3g00182 638 Pfam Sulfate permease family 261 456 IPR011547 GO:0016020
Trre3g00182 638 PANTHER SULFATE TRANSPORTER 45 629 IPR001902 GO:0016020|GO:0055085
Trre3g00182 638 NCBIfam sulfate permease 86 627 IPR001902 GO:0016020|GO:0055085
Trre3g00182 638 FunFam Sulfate transporter 31 488 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00182 Trre-Chr3 1239006 1242467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00182 15 638 Inorganic Solute Cotransporters AT1G22150 68.624 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00182 K17470 - gmx:100784124 958.362