Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00175 ATGGAGACAGTGACTTCATTTTCTAAACATTCCTTTCTTTTTTGGGCTATTTTGATGCTTCATTTGCTGCTTAAAGCTTCTTCTAATGCAGAAGGTGATGCCTTGAATGCTTTGAAGAGCAACTTGAATGATCCTAAAAATGCTCTTCAAAGTTGGGATACTACCCTTGTCAATCCTTGCACATGGTTTCATGTTCAATGCAATGCTGATAAAAGTGTGACCCGCGTTGATCTTGGAAATATGGACCTTTCTGGTACACTGGTTTCAGATCTTGGTGATCTCTCAAATTTGAAGTCTTTGGCACTTTATAATAATAATATAACAGGAACAATCCCAGAAGAGCTAGGAAATTTGGCAAGCTTGGAGAGTTTGGATCTTTACTTGAACAATTTAAGTGGTACTATACCTGATACATTGGGCAAGCTTCAAAAACTACGTTTCCTGCGTCTCAATAATAACACCTTGACTGGCCACATTCCCATGTCATTGACAAATGTTTCAACTCTGCAAGTTCTTGATCTCTCAAGCAACAATCTAGAAGGGGATGTTCCAGTGAATGGTTCATTTTTATTATTTACCCCTGTCAGTTATCATAATAATCCTCGCTTGAAACAACCAAAAATCATTCCTACACCACTTTCTCCACCGTCATCAGCTTCTTCAGGTACCACTAATACTGGAGTTATTGCTGGAGGAGTTGCTGTCGGTGCTGCTCTATTGTTTGCTGCCCCTGCAATTGCACTTATATATTGGCGCCGAAAAAGAAAACCTCAAGATCATTTCTATGATGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAGGTTTTCGCTACATGAGCTTCTAGTAGCAACAGATAACTTCCGTAATGAAAACATTCTAGGTAGAGGTGGATTCGGAAAGGTTTATAAAGGACGCTTAGCTGATGGTACTCTTGTAGCAGTAAAAAGACTTAAAGAAGAACGTGCACAGGGTGGTGAGCTGCAATTTCAGACAGAAGTGGAAATGATCAGCATGGCTGTGCATCGTAATTTGCTTCGGCTTTGTGGTTTTTGCATGACATCTACGGAACGTTTGCTTGTATATCCTTTGATGGCTAATGGAAGTGTAGCATCATGTTTACGAGAACGTAATGACTCTCAACCGCCACTTGAGTGGTCAATGCGGAAGAATATTGCGCTTGGAGCTGCCAGGGGGCTTGCTTACTTGCATGATCATTGTGACCCTAAGATTATCCATCGTGATGTGAAAGCTGCAAATATACTGTTGGATGATGAATTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAGGGTTATGAATTACAAAGATACCCATGTTACTACTGCTGTTCGTGGTACGGTTGGGCATATAGCACCTGAGTACCTGTCAACGGGGAAGTCTTCAGAAAAGACCGATGTTTTTGGATATGGTGTGACACTTCTTGAATTAATAACTGGACAGAGGGCTTTTGATCTTGCACGTCTTGCTAGCGATGATGATGTGATGTTGCTTGATTGGGTTAAAGGACTTCTCACAGACAAGAAGTTGGAAACTCTTGTAGATGCAGAATTAAAAGGAAATTATGACGATGATGAGGTAGAGCAGTTATTCCAAGTGGCTTTATTATGCACACAAGGGTCCCCTATGGAAAGACCAAAGATGTCAGAGGTGGTGAGAATGCTAGAAGGCGATGGTTTGGCCGAAAAATGGGAGCAATGGCAGAAAGAAGAAACGTATCGACAAGATTATAGCAGCAATCACATGCATTACCCTAATGCAAATTGGATAGTGGTAGATTCAACTTCAAATATTCAGCCAGATGAACTCTCAGGCCCTAGATGA 1857 0.4114 METVTSFSKHSFLFWAILMLHLLLKASSNAEGDALNALKSNLNDPKNALQSWDTTLVNPCTWFHVQCNADKSVTRVDLGNMDLSGTLVSDLGDLSNLKSLALYNNNITGTIPEELGNLASLESLDLYLNNLSGTIPDTLGKLQKLRFLRLNNNTLTGHIPMSLTNVSTLQVLDLSSNNLEGDVPVNGSFLLFTPVSYHNNPRLKQPKIIPTPLSPPSSASSGTTNTGVIAGGVAVGAALLFAAPAIALIYWRRKRKPQDHFYDVPAEEDPEVHLGQLKRFSLHELLVATDNFRNENILGRGGFGKVYKGRLADGTLVAVKRLKEERAQGGELQFQTEVEMISMAVHRNLLRLCGFCMTSTERLLVYPLMANGSVASCLRERNDSQPPLEWSMRKNIALGAARGLAYLHDHCDPKIIHRDVKAANILLDDEFEAVVGDFGLARVMNYKDTHVTTAVRGTVGHIAPEYLSTGKSSEKTDVFGYGVTLLELITGQRAFDLARLASDDDVMLLDWVKGLLTDKKLETLVDAELKGNYDDDEVEQLFQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKEETYRQDYSSNHMHYPNANWIVVDSTSNIQPDELSGPR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00175 618 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 577 - -
Trre3g00175 618 FunFam Somatic embryogenesis receptor kinase 1 27 213 - -
Trre3g00175 618 Gene3D Phosphorylase Kinase; domain 1 261 367 - -
Trre3g00175 618 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Trre3g00175 618 SUPERFAMILY Protein kinase-like (PK-like) 271 567 IPR011009 -
Trre3g00175 618 SUPERFAMILY L domain-like 29 191 - -
Trre3g00175 618 ProSiteProfiles Protein kinase domain profile. 292 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00175 618 Pfam Protein tyrosine and serine/threonine kinase 295 566 IPR001245 GO:0004672|GO:0006468
Trre3g00175 618 Gene3D Transferase(Phosphotransferase) domain 1 369 586 - -
Trre3g00175 618 SMART serkin_6 292 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00175 618 Gene3D Ribonuclease Inhibitor 27 209 IPR032675 -
Trre3g00175 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Trre3g00175 618 FunFam Somatic embryogenesis receptor kinase 1 261 368 - -
Trre3g00175 618 FunFam Somatic embryogenesis receptor-like kinase 1 369 586 - -
Trre3g00175 618 Pfam Leucine rich repeat 95 155 IPR001611 GO:0005515
Trre3g00175 618 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00175 Trre-Chr3 1211705 1215905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00175 13 618 Receptor kinase-like Gene Family AT4G33430 71.713 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trre3g00175 PK_Tyr_Ser-Thr 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00175 K13416 - gmx:100800522 953.74