LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre3g00174	ATGGAACAAGTGACTTCATCTTATAAAGTTTGGTTTCTTTTTTGGGCAATTTTGGTTTTTGATTTGGTTTTTAAAGCTTCTTCTAATGTGGAAGGTGATGCACTGAATGCATTGAAGAGCAACTTGAATGATCCTAATAATGTTCTTCAAAGTTGGGATGCTACTCTTGTGAATCCCTGTACGTGGTTTCATGTTACGTGCAATGGGGATAACAGTGTGACCCGTGTTGATCTTGGAAATGCGGATCTTTCTGGTACACTGGTTACACAACTTGGTGATCTCGCAAATTTGCAGTACTTGGAACTTTACAGTAATAATATAACAGGAAAAATCCCAGAAGAGCTTGGAAATTTGACAAATTTGGTGAGCTTGGATCTTTACTTGAACCATTTAAGTGGTAACATACCGAGTACACTGGGGAACCTTAAAAAACTACGTTTCCTGCGTCTCAATAATAACACCTTGACTGGCCGCATTCCTGTGCCTTTGACAACTGTTTCTTCGCTGCAAGTTCTTGATCTCTCAAACAACAATTTAGAAGGGGATGTCCCAGTGAATGGTTCATTTTCATTATTTACCCCTATCAGTTATCAAAATAATCCTCACTTGATACAACCTAAAAATGCTCCTGCGCCACTCTCTCCACCGTCACCAGCTTCTTCAGGTGGTAGTAATACTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCTCTGTTGTTTGCAGCTCCTGCAATTGCACTTGCGTATTGGCGAAAAAGAAAACCAGCGGACCATTTCTTTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAGGTTTTCTCTACGTGAGCTTCTAGTAGCAACAGATAACTTCAGTAACAAAAACATTCTAGGTAGAGGTGGATTCGGAAAGGTTTATAAAGGACGCTTAGCTGATGGCACACTTGTAGCTGTAAAAAGACTTAAAGAGGAACGCACACAGGGCGGGGAGCTGCAATTTCAAACAGAAGTGGAAATGATCAGTATGGCTGTGCATCGTAATTTGCTTCGGCTTCGTGGTTTTTGCATGACATCTACCGAACGTTTGCTTGTGTATCCTTACATGGCCAATGGAAGTGTAGCATCATGCTTACGAGAACGTAACGAGTCTGAACCGCCACTTGAATGGCAAATGCGGAAGAATATTGCGCTGGGATCTGCCAGAGGGCTTGCTTACTTGCATGATCATTGTGACCCTAAGATTATCCATCGTGATGTGAAAGCTGCAAATATATTGTTGGATGAGGAATTTGAAGCAGTTGTGGGAGATTTCGGTTTAGCAAAGCTTATGGATTACAAAGATACCCATGTTACTACTGCTGTTCGTGGTACGATTGGGCATATAGCACCCGAGTACCTGTCAACTGGAAAGTCTTCAGAAAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATCTAGCACGTCTTGCCAATGATGATGATGTTATGTTGCTTGATTGGGTTAAAGGACTTCTCAAAGACAAGAAATTGGAAACACTGGTAGATGCAGAGTTAAAGGGAGAGTATGATGATGATGAGGTAGAGCAGCTAATCCAAGTGGCTTTACTATGCACACAAGGGTCCCCTATGGAAAGACCAAAGATGTCCGAGGTGGTGAGAATGCTAGAAGGTGATGGCTTGGCCGAAAAATGGGAGCAATGGCAGAAAGAAGAAACGTATCGACAAGATTTTAACAACAACCACATGCATCACCCTGGTGCAAATTGGATAGTAGTAGATTCAACCTCACATATTCAGCCAGATGAACTCTCAGGTCCTAGATGA	1854	0.4234	MEQVTSSYKVWFLFWAILVFDLVFKASSNVEGDALNALKSNLNDPNNVLQSWDATLVNPCTWFHVTCNGDNSVTRVDLGNADLSGTLVTQLGDLANLQYLELYSNNITGKIPEELGNLTNLVSLDLYLNHLSGNIPSTLGNLKKLRFLRLNNNTLTGRIPVPLTTVSSLQVLDLSNNNLEGDVPVNGSFSLFTPISYQNNPHLIQPKNAPAPLSPPSPASSGGSNTGAIAGGVAAGAALLFAAPAIALAYWRKRKPADHFFDVPAEEDPEVHLGQLKRFSLRELLVATDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTSTERLLVYPYMANGSVASCLRERNESEPPLEWQMRKNIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDAELKGEYDDDEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKEETYRQDFNNNHMHHPGANWIVVDSTSHIQPDELSGPR	617

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre3g00174	617	Gene3D	Transferase(Phosphotransferase) domain 1	368	585	-	-
	Trre3g00174	617	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	10	576	-	-
	Trre3g00174	617	Gene3D	Phosphorylase Kinase; domain 1	260	367	-	-
	Trre3g00174	617	SMART	serkin_6	291	565	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre3g00174	617	SUPERFAMILY	Protein kinase-like (PK-like)	270	566	IPR011009	-
	Trre3g00174	617	Gene3D	Ribonuclease Inhibitor	28	210	IPR032675	-
	Trre3g00174	617	FunFam	Somatic embryogenesis receptor kinase 1	260	367	-	-
	Trre3g00174	617	Pfam	Leucine Rich Repeat	168	181	IPR001611	GO:0005515
	Trre3g00174	617	Pfam	Leucine Rich Repeat	96	118	IPR001611	GO:0005515
	Trre3g00174	617	FunFam	Somatic embryogenesis receptor-like kinase 1	368	585	-	-
	Trre3g00174	617	Pfam	Leucine rich repeat N-terminal domain	29	68	IPR013210	-
	Trre3g00174	617	Pfam	Protein kinase domain	292	563	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre3g00174	617	ProSitePatterns	Protein kinases ATP-binding region signature.	297	319	IPR017441	GO:0005524
	Trre3g00174	617	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	414	426	IPR008271	GO:0004672\|GO:0006468
	Trre3g00174	617	SUPERFAMILY	L domain-like	31	194	-	-
	Trre3g00174	617	MobiDBLite	consensus disorder prediction	205	224	-	-
	Trre3g00174	617	FunFam	Somatic embryogenesis receptor kinase 1	27	213	-	-
	Trre3g00174	617	ProSiteProfiles	Protein kinase domain profile.	291	575	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre3g00174	Trre-Chr3	1204257	1210116	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre3g00174	13	617	Receptor kinase-like Gene Family	AT4G33430	77.064	0.0	956

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Trre3g00174		Pkinase	1.6e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre3g00174	K13416		-	gmx:100800522	1049.27