Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00168 ATGGGAGATCAGAATAATAATTACAATGTCAACCTTCCACCTGGGTTTCGTTTTGATCCCACAGATGAAGAACTTGTAGTTCATTTCCTTCATAGAAAAGCAACACTCTTACCTTGCCACCCTCATGTCATCCCTGATCTTCACCTATACTCATATGATCCATGGCAACTTCATGGTAGAGCTTTGTTGGAGGGAAAAAAATGGTACTACTATAGCAGAAGGACACAAAATAGGGTAACTGGCAATGGTTATTGGAAGGCAACAGGAATGGAAGAGGCAGTGATTTCTAGCACAAACAATATGAAAGTTGGCATGAAGAAACATTTTGTGTTCCATGTTGGAGAATCCCCTGCTTCAGGTATCAAAACCAATTGGATAATGCAAGAATTTTGTCTATCAGACTCTGCTTCCTCCTCTGCCAAATCATCTAAAAGAAAATCACAACCAGTTAAAGAGTATAGTAAATGGGTGGTATGTCGAGTTTATGAGCAAAATGAGGATGATGATGATGATGGAATGGATCAGCTCTCTTATTTAGATGAAGTTTTCTTGTCATTAGATGATCTTGACGAAATAAGCTTACCAAATTATTAA 594 0.3805 MGDQNNNYNVNLPPGFRFDPTDEELVVHFLHRKATLLPCHPHVIPDLHLYSYDPWQLHGRALLEGKKWYYYSRRTQNRVTGNGYWKATGMEEAVISSTNNMKVGMKKHFVFHVGESPASGIKTNWIMQEFCLSDSASSSAKSSKRKSQPVKEYSKWVVCRVYEQNEDDDDDGMDQLSYLDEVFLSLDDLDEISLPNY 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00168 197 SUPERFAMILY NAC domain 9 164 IPR036093 GO:0003677|GO:0006355
Trre3g00168 197 PANTHER NAC TRANSCRIPTION FACTOR 56 12 170 - -
Trre3g00168 197 FunFam NAC domain-containing protein 104 21 167 - -
Trre3g00168 197 ProSiteProfiles NAC domain profile. 12 164 IPR003441 GO:0003677|GO:0006355
Trre3g00168 197 Gene3D NAC domain 21 169 IPR036093 GO:0003677|GO:0006355
Trre3g00168 197 Pfam No apical meristem (NAM) protein 13 132 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00168 Trre-Chr3 1166911 1168139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00168 11 184 NAC Transcription Factor Family AT1G69490 40.110 1.65e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre3g00168 NAM 9.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00168 - - gmx:100170712 298.13