Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00164 ATGGATAAGTCTGTCCGGGTCATATTATTGGGCTTAAACCCATTTTACAAACAAAGAGAAAAGCCCATCTACGAAACCCTAAATCCCAAAACCATTTTTAATACAAACCATTCCTTCAAGTTTTCATTTTCACGGCGTACAAAATCAACACATCTTCGAGATCCCGATCCACGCGCCGCCATCATGGTGAACGTTCCAAAGACAAAGAAAACCTACTGCAAGAGCAAGGAATGCAAGAAGCACACACTTCACAAGGTTACCCAATACAAGAAGGGTAAAGATAGCATCGCCGCTCAAGGCAAGCGCCGTTACGATCGCAAACAGTCCGGTTATGGTGGTCAGACTAAGCCCGTTTTTCACAAGAAGGCAAAAACCACCAAGAAAATTGTTCTGAGGTTGCAATGCCAGGGATGCAAACATGTTTCTCAACATGCAATCAAGAGGTGCAAGCATTTTGAGATTGGTGGTGACAAGAAGGGAAAAGGAACATCTCTCTTCTAG 501 0.4351 MDKSVRVILLGLNPFYKQREKPIYETLNPKTIFNTNHSFKFSFSRRTKSTHLRDPDPRAAIMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00164 166 FunFam 60S ribosomal protein L44 62 166 - -
Trre3g00164 166 MobiDBLite consensus disorder prediction 94 117 - -
Trre3g00164 166 Gene3D - 62 166 - -
Trre3g00164 166 PANTHER 60S RIBOSOMAL PROTEIN L36A/L44 62 166 IPR000552 GO:0003735|GO:0005840|GO:0006412
Trre3g00164 166 Pfam Ribosomal protein L44 80 155 IPR000552 GO:0003735|GO:0005840|GO:0006412
Trre3g00164 166 ProSitePatterns Ribosomal protein L44e signature. 124 135 IPR000552 GO:0003735|GO:0005840|GO:0006412
Trre3g00164 166 SUPERFAMILY Zn-binding ribosomal proteins 63 155 IPR011332 GO:0006412
Trre3g00164 166 MobiDBLite consensus disorder prediction 94 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00164 Trre-Chr3 1133725 1134773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00164 62 166 Cytoplasmic Ribosomal Protein Gene Family AT3G23390 92.381 1.16e-66 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00164 K02929 - ini:109159709 214.157