Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00159 ATGGTTGGAAGTGTTGATGTTTTGGGTGATGATTTGAACATTAATGGAGCAGTTGCAGTATTGCCTGATGATTTTGATGTGGCTGCCATTATCAAAGATCCTTTGCCTCCTGTAGTTGCAGAAAATGGCATTGACAAGGTGGAGGGTCAGATCAATGCGGGAAAAGAGAGAAGGGAAATAGTACTGGGGAGAAATATTCATACCACATGTCTAGAAGTCACGGAGCCAGAAGCAGATGATGAGATTACTGGGGATCGTGATGCTCATATGGCGAGTGTGTTGGCCAGATACAGAAAATCTTTAACTGAAAGGACAAAGTATCATTTAGGCTACCCCTATAATTTGGATTTTGATTATGGCGCACTCTCTCAACTTCAGCACTTTTCCATAAATAACCTTGGAGATCCATTTATTGAAAGCAATTATGGTGTCCACTCCCGTCAGTTTGAAGTTGGTGTTTTGGATTGGTTTGCCAGATTGTGGGAATTGGAGAAAAATGAGTACTGGGGCTATATAACAAACTGTGGCACAGAAGGCAATCTCCATGGCATCCTAGTTGGGAGAGAGGTGTTACCAGATGGGATTTTATATGCCTCACGGGAGTCACATTATTCAATTTTTAAAGCTGCCCGTATGTACAGAATGGAATGTGTGAAGGTTGAGACTCTCTGTTCTGGCGAGATTGATTGTGATGATTTCAAGGCTAAACTTCTTTGCCACCAGGACAAGCCAGCAATTATAAATGTCAACATAGGTACAACTGTGAAAGGAGCTGTGGATGATCTTGATCTGGTCATAAAGAAACTTGAAGAAGCTGGATTTTCGCATGACAGGTTCTACATCCATGTTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTTGTGAAACGAGCTCCAAAAGTTACTTTTAAGAAACCTATTGGCAGTGTCAGTGTTTCTGGCCACAAATTTGTGGGGTGCCCCATGCCTTGTGGTGTGCAGATAACAAGATTGGAGCATATTAATGCTCTTTCCAGGAATGTGGAATACCTTGCTTCTAGGGATGCCACAATCATGGGTAGTCGAAATGGCCATGCGCCCATATTCCTTTGGTATACCTTGAACCGGAAAGGATACAGAGGCTTTCAGAAAGAAGTACAGAGATGCTTGCGAAATGCACACTACTTCAAAGACCGCCTTATTGAGTCTGGGATTGGTGCAATGCTTAATGAGCTTAGCAGTACGGTTGTATTTGAGCGACCTCATGATGAGGAATTTATACGCAAGTGGCAGTTAGCATGCAAGGGGAACATCGCTCATGTGGTGGTGATGCCAAACGTCACTATTGAGAAGCTTGATGATTTTCTAAACGAGCTTGTGCAGAAGCGTGCTACCTGGTTTGAAGATGAGAAGTGTCAACCATATTGTATAGCATCAGATGTAGGTGAAAACAGTTGCCTATGTGCACTGCATAAGTAA 1458 0.4287 MVGSVDVLGDDLNINGAVAVLPDDFDVAAIIKDPLPPVVAENGIDKVEGQINAGKERREIVLGRNIHTTCLEVTEPEADDEITGDRDAHMASVLARYRKSLTERTKYHLGYPYNLDFDYGALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKNEYWGYITNCGTEGNLHGILVGREVLPDGILYASRESHYSIFKAARMYRMECVKVETLCSGEIDCDDFKAKLLCHQDKPAIINVNIGTTVKGAVDDLDLVIKKLEEAGFSHDRFYIHVDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHINALSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQRCLRNAHYFKDRLIESGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHVVVMPNVTIEKLDDFLNELVQKRATWFEDEKCQPYCIASDVGENSCLCALHK 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00159 485 FunFam Serine decarboxylase 1 124 367 - -
Trre3g00159 485 Pfam Pyridoxal-dependent decarboxylase conserved domain 195 404 IPR002129 GO:0016830|GO:0019752|GO:0030170
Trre3g00159 485 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 309 330 IPR021115 GO:0016831
Trre3g00159 485 SUPERFAMILY PLP-dependent transferases 104 454 IPR015424 -
Trre3g00159 485 Gene3D Aspartate Aminotransferase, domain 1 368 456 IPR015422 GO:0003824
Trre3g00159 485 Gene3D - 123 367 IPR015421 GO:0003824
Trre3g00159 485 PANTHER - 51 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00159 Trre-Chr3 1105475 1109502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00159 208 391 Calmodulin-binding Proteins AT1G65960 27.461 4.00e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00159 K25193 - gmx:100785163 902.894