Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00158 ATGGCTGAAATTCAACACCACCATGCAGCTACACTAGCTCGTAGTGAATCAAAAGTGTACAACATGGATGTTGAAAAAGAAGAAAATGATGAAAAAGATTATACACAAAGAGCTCAATGGCTTAGAGCAGCTGTTTTAGGTGCTAATGATGGTTTACTCTCAACAGCATCCTTAATGATGGGTGTTGGAGCCGTTACAAAAGATGTTAAGACAATGATTCTAACTGGAATTGCTGGTCTTGTAGCTGGTGCATGTAGCATGGCAATTGGTGAATTTGTTTCCGTTTATTCACAATATGATATTGAGTATGCACAAATGAAAAGACAAGGAAACACTTCTCAAAAAAATAAACTACCTAACCCTTATTATGCCGCTTTTGCCTCGGCCGTCGCTTTTGCGGTCGGGGCCTTTGTGCCGCTACTCGGCGCGGCGTTTGTGAAAGATTATAAGGTTAGGTTGGGAGTTGTGGTTGGTGTTGTTAGTTTTGCTTTGTTTGTTTTTGGATTGTTGAGTGCTCTTCTTGGGAAAGCACCTTTGATTAAGTCTTGTTTGAGGGTTTTGATTGGTGGATGGCTTGCTATGTCTCTTACTTTTGGTTTAACTAAGCTTGTAAACCATGTTGTAGTTTGA 630 0.4016 MAEIQHHHAATLARSESKVYNMDVEKEENDEKDYTQRAQWLRAAVLGANDGLLSTASLMMGVGAVTKDVKTMILTGIAGLVAGACSMAIGEFVSVYSQYDIEYAQMKRQGNTSQKNKLPNPYYAAFASAVAFAVGAFVPLLGAAFVKDYKVRLGVVVGVVSFALFVFGLLSALLGKAPLIKSCLRVLIGGWLAMSLTFGLTKLVNHVVV 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00158 209 Pfam VIT family 41 114 IPR008217 GO:0005384|GO:0030026
Trre3g00158 209 Pfam VIT family 108 201 IPR008217 GO:0005384|GO:0030026
Trre3g00158 209 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 24 207 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00158 Trre-Chr3 1099261 1099890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00158 14 204 Nodulin-like Gene Family AT3G43660 68.229 5.01e-94 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00158 K22736 - gmx:100811713 272.707