Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00152 ATGAAGGAGAATTTATGCAATGTAGTACAAGGTTTGAAGCCAACGTTGTTAATGGTTATGGTACAAATGACATTTGCTGGTGTTAATGTTCTCTACAAACTTGCTGTTAATGATGGCATGAACTTAAGGATTGTTGTTGCCTATCGTTTTATATTTGCAACTGCTTTCATTGCTCCACTTGCTTTTGTTCTTGAAAGGAAGAAGAGGACAAAGATGACTTGGATGATACTGTTTCAGACTTTTCTCTGCGGTTTGTTTGGAGGATCATTAGCTCAAAACTTCTACTTAGAAGCCATGGCTTTAACTTCAGTAACATTTGCATCCGCAATGGCCAACCTTATACCGGCCATAACCTTTATTATGGCCGTTTCCTTAGGGATGGAAAAATTAAATTTGAGAACGAAAGCAGGGAAAGCAAAGATAATGGGTACAATGACTGGAATTAGTGGTGCAATGATATTGACATTCTTTAAAGGCATTGAAATCAAAATAGGTTCATCTCACTTAAACCTTATGCATCACACAAACGGTGTCGGATTGCACCCACATGCTACAATATCCAAAGGTAGTACAGTTTTGGGCTCACTATGTGCCTTGGCTAGTGCCATCTCTTATGCATCATGGCTTATTATTAATGCAAAGATGAGTGAAAAGTATCCAACTCATTACTCAAGCACAGCATTGACATCTTTTTGGGCATCACTAGTTTCCATTATGTTTGCTCTCTGTTTTGAGAGGGATTTCAGTCAATGGAGATTGGGTTGGAATATTAGGCTACTAACCGTTGCTTATGCGGGTATAGTGGTTTCAGGAGCAATGATAGTTGTAATTTCAGGGGTAGTACATATGAGAGGTCCATTGTTTGCCTCTGTTTTTAGCCCTCTAATGCTTGTCATGGTGGCCTTGGCTAGTGTTACTTTGTTGAATGAGAAGCTATACCTTGGGACCATTATTGGAGCAGTTTTGATTGTATGTGGCTTGTATACGGTTGTATGGGGTAAGAGCAAAGAAAAGAAGAAAAATAATCAATTAGTTCCATCACAAAACTCCAATGAATTTGACACAGTTGAAATAGTTGTGAGGCCTGTAGTAGAAGATAAAAGTAACCATAATGATAGCAATGGTGAATCTCAAGGTAATAATACTTTACAAGTACATGAACATGAACATGAACATGAAGAGCAAAGTCATGAACATGTACAAGATCAAGAAAAAGGAGAAGAAATTGGCCATCATGACTAA 1242 0.38 MKENLCNVVQGLKPTLLMVMVQMTFAGVNVLYKLAVNDGMNLRIVVAYRFIFATAFIAPLAFVLERKKRTKMTWMILFQTFLCGLFGGSLAQNFYLEAMALTSVTFASAMANLIPAITFIMAVSLGMEKLNLRTKAGKAKIMGTMTGISGAMILTFFKGIEIKIGSSHLNLMHHTNGVGLHPHATISKGSTVLGSLCALASAISYASWLIINAKMSEKYPTHYSSTALTSFWASLVSIMFALCFERDFSQWRLGWNIRLLTVAYAGIVVSGAMIVVISGVVHMRGPLFASVFSPLMLVMVALASVTLLNEKLYLGTIIGAVLIVCGLYTVVWGKSKEKKKNNQLVPSQNSNEFDTVEIVVRPVVEDKSNHNDSNGESQGNNTLQVHEHEHEHEEQSHEHVQDQEKGEEIGHHD 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00152 413 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 143 - -
Trre3g00152 413 MobiDBLite consensus disorder prediction 383 413 - -
Trre3g00152 413 MobiDBLite consensus disorder prediction 367 413 - -
Trre3g00152 413 PANTHER WAT1-RELATED PROTEIN 14 343 IPR030184 GO:0016020|GO:0022857
Trre3g00152 413 Pfam EamA-like transporter family 14 137 IPR000620 GO:0016020
Trre3g00152 413 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020
Trre3g00152 413 SUPERFAMILY Multidrug resistance efflux transporter EmrE 234 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00152 Trre-Chr3 1058278 1063966 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00152 12 354 Nodulin-like Gene Family AT1G25270 41.834 2.47e-91 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00152 - - tpra:123910665 611.298