Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00148 ATGAAAGGGGTGTGGAATAGAATGCATAGTTTGAAACCAGTGATGCTTATGGTTTTGGTACAAATTGCATATGCTGCAGTTAATGTTCTTTACAAGCTTGCCATCAATGATGGAATGACTGTTAAAGTTGCTACTGCTTATCGTCTTGCTTTTGGTTCTGCTTTTACTGTTCCTCTCGCTCTCATTACTGAAAGGAAGAAGAGGCCAAAGTTGACTTGGAGGGTACTTTTCATGGCATTTCTTTGTGGCTTGTTTGGGGGAAGTTTATTTCAAAATCTTTTCTATGAGGCCTTGGCTCTAACATCAGCAACTTTTGCATCAGCTATCTACAACCTTATTCCAGCCATCACCTTTATCATGGCCATCTCCTGCGGATTTGAAAAATTAAATTTGAGGGCAGCATCTGGAAAAGCTAAGGTATTAGGAACAGTAATTGGAATAGGTGGGGCTATGATGTTGATATTTCTCAAAGGTGTAGAAATTAATATCTGGCCCTTCCACATCAACCTTTTGCATCCACCTCAACACCAAGATGGCCACGTGGCATCACTAAATGTTAATTCTAGTAGTAAATGGTTGGGTGTTCTGTGTGCAGTAGCAAGCTGCTTCTCTTTTTCTTTGTGGCTAATAATCCAGGCTAAAATGAGCAAAGAATATCCAAGTCATTACTCAAGTACAGCTTTAATGTCTACAATGGGAGCAATACAAGCCACTGCTTTTGGTCTTTGTGTTGAAAGGGATTGGAGCCAATGGAAGTTGGGTTGGAATATTAGGTTATTAGCTGTGGCTTACTCGGGAATCGTTGCCTCTGGATTAGTGGTAATTGTGACTTCGTGGTGCATAAAGATGAGGGGTCCACTATTTGCGTCTGTCTTCAACCCTTTGATGCTTTTGTTTGTGACTATTGTCGCTTCTATGACGTTGGATGAAAATTTATATTTAGGAAGCTTGATTGGAGCAGTGTTGATTGTGTGTGGTTTGTACATGGTTCTTTGGGGTAAGAGTAAAGAATTGAAAAAGATTGCTCAATTGGCTACATCAAAAATTGCCCAAGAAACTGAAGATATAGAAGTTGTTGTTATGCCCAAACTAGAAGTAGTAGATCATGATAAATTACATGTCAACAATAATCACACAGAAGTTGACAAAGATCATGTCGATTATTTATCAAAAAATAGAGAAATTAGTAGTAGTATTGGTGATGATCAAGAGATAGAGAAATGTTCAACTAATTAA 1236 0.3843 MKGVWNRMHSLKPVMLMVLVQIAYAAVNVLYKLAINDGMTVKVATAYRLAFGSAFTVPLALITERKKRPKLTWRVLFMAFLCGLFGGSLFQNLFYEALALTSATFASAIYNLIPAITFIMAISCGFEKLNLRAASGKAKVLGTVIGIGGAMMLIFLKGVEINIWPFHINLLHPPQHQDGHVASLNVNSSSKWLGVLCAVASCFSFSLWLIIQAKMSKEYPSHYSSTALMSTMGAIQATAFGLCVERDWSQWKLGWNIRLLAVAYSGIVASGLVVIVTSWCIKMRGPLFASVFNPLMLLFVTIVASMTLDENLYLGSLIGAVLIVCGLYMVLWGKSKELKKIAQLATSKIAQETEDIEVVVMPKLEVVDHDKLHVNNNHTEVDKDHVDYLSKNREISSSIGDDQEIEKCSTN 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00148 411 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Trre3g00148 411 PANTHER WAT1-RELATED PROTEIN 12 338 IPR030184 GO:0016020|GO:0022857
Trre3g00148 411 Pfam EamA-like transporter family 12 154 IPR000620 GO:0016020
Trre3g00148 411 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020
Trre3g00148 411 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00148 Trre-Chr3 1005655 1008239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00148 11 358 Nodulin-like Gene Family AT1G25270 42.816 1.80e-97 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00148 - - gmx:100809587 608.601