Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00146 ATGTCATTCCGCAGCATAGTTCGTGACGTTCGTGATAGTTTTGGGAGCTTATCTAGGCGTAGTTTTGATGTCAAACTTACTGGCCAGCATCATAGAGGAAAATCACATGGATCGGTGCAGGATTTGCATGACCAACCTCTAGTAATTCAAAATAGTTGCTGGGCGAACTTACCCCCAGAGTTACTATTTGATGTCATTCGACGGCTAGAGGAGAGTGAGAATACATGGCCTTCACGAAAGCATGTAGTTGCATGTGCTTCTGTTTGCCAATCTTGGAGGAATATGTGCAAGGACATTGTTAAGAGCCCTGAGTTCTGCGGCAAACTTACGTTTCCTGTGTCCCTGAAGCAGCCTGGACCACGAGATGGAATCATTCAATGCTTTATCAAACGAGATAAATCTAACTTAACATATCACCTATTCCTTTGTCTGAGCCCTGCTTTGTTGGTTGAAAATGGAAAATTCCTCCTTTCTGCTAAAAGGACACGGAGAACAACATACACTGAGTATGTTATTTCCATGGATGCTGACAACATCTCTAGATCAAGTAATACTTACATCGGAAAGCTGAGATCAAACTTTCTTGGAACAAAATTCATTATATATGATACACAGCCTCCCTACACTTCTGCCCATATATGCCCTCCGGGAACTGGGAAGACGAGCCGCAGATTTTATTCTAAAAAGGTATCACCTAAGGTCCCATCCGGGAGTTACAACATAGCTCAGGTAACATATGAACTAAATGTGCTCGGTACTCGAGGCCCAAGGAAGATGCACTGCATTATGCATTCAATACCAAATTCAGCACTTGATGCGGGCGGCTCCGTTCCTGGACAGCCAGAACTTATTCCCCGTTCCCTGGAGGATTCATTCAGAAGCATCTCGTTTTCAAAGTCTCTTGATCATTCCATTGAGTTCAGCAGCTCGCGATTTTCTGAGATCGGGGGATCCTATAATGAGGAAGATGACAGCAAGATGAGACCTTTGGTTCTGAAAAACAAACCTCCAAGATGGCATGAACAATTACAGTGCTGGTGCCTTAACTTCCGGGGACGAGTAACTGTTGCGTCTGTTAAGAACTTTCAGTTGATTGCGTCCACCCAACCACCTGCTGGCGCGCCAACACCATCTCAACCAGCTCCACCAGAACATGATAAGATTATTCTGCAATTCGGCAAAGTTGGGAAAGATATGTTCACCATGGATTATCGATATCCTTTATCTGCATTCCAAGCTTTTGCAATATGCTTGAGCAGCTTCGACACCAAGTTGGCTTGTGAATAG 1287 0.4421 MSFRSIVRDVRDSFGSLSRRSFDVKLTGQHHRGKSHGSVQDLHDQPLVIQNSCWANLPPELLFDVIRRLEESENTWPSRKHVVACASVCQSWRNMCKDIVKSPEFCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYTSAHICPPGTGKTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGSVPGQPELIPRSLEDSFRSISFSKSLDHSIEFSSSRFSEIGGSYNEEDDSKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00146 428 CDD F-box_AtTLP-like 54 98 - -
Trre3g00146 428 PANTHER TUBBY-RELATED 27 426 - -
Trre3g00146 428 FunFam Tubby-like F-box protein 111 428 - -
Trre3g00146 428 Pfam Tub family 115 423 IPR000007 -
Trre3g00146 428 FunFam Tubby-like F-box protein 49 102 - -
Trre3g00146 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Trre3g00146 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Trre3g00146 428 Gene3D - 49 101 - -
Trre3g00146 428 PRINTS Tubby superfamily signature 238 265 IPR000007 -
Trre3g00146 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Trre3g00146 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Trre3g00146 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Trre3g00146 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Trre3g00146 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Trre3g00146 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Trre3g00146 428 Pfam F-box domain 54 101 IPR001810 GO:0005515
Trre3g00146 428 SUPERFAMILY F-box domain 50 98 IPR036047 GO:0005515
Trre3g00146 428 Gene3D Tubby Protein; Chain A 111 428 IPR025659 -
Trre3g00146 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00146 Trre-Chr3 993748 996231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00146 1 428 TUB Transcription Factor Family AT1G76900 70.282 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre3g00146 Tub 1.5e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00146 K19600 - gmx:100814578 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00146 3 993748 996231 Trre3g00146 3 993748 996231 ECH