Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00143 ATGGAGAATAGTACAAGTAATAACAGCTACGAGATTAAGCTTGAGAAATTAAACACAATACTCATAAAACCCTCTAAACCCACACCTTCACATCTTCAAAATTTCAAACTCTCATTACTTGACCAACTTTCTCCTAATATTCATGGCAACACCACTTTCTTCTACCCAAATCACAACAACAATAATAATAACTATTTTTCTGATTTTTTAAATAAATCAAAACTTCTTCAAAATTCACTTTCTCAAACATTATCCCATTTTTACCCTCTCGCCGGCCGTCTCCATGACGCCACCACCATTCACTGTAACGACGACGGCGTTTTCTTCATTGAATCACAAACAACCACCACTCTCTCTGAAATTCTCACCGATCCTAATTTCAATACACTCCAATGCTTTCTCCCAACCACTGAGGAAAAACAAAATATGCTGTTATTACTCCGATTCACTTTGTTCAGTTGCGGTTCCACCGCAATTACCATATCCCTCACACACAAGATCGTTGACTTTAACACACTCATCATTTTTCTTAACACTTGGACCGCCGTCGCCACCGGAAGTGAAATTCCACTCCCTGATTTAACCGTCGCCGCCGCTCTTTTTCCTCCGAGAGAAATTCCCGGCATGTCTGCTTCCGTTAAAACTTCCGATGCAAAATTTACTTCTAGAAGATTCATTTTCGAAGCATCCAAAATAGAAGAACTAAAGACAAAAATCAAAAACAAAATCGAATCCGAATTTCAATTTCATCCTTCCAGGGTAGAGGTTGTTCTAGCTCTGATTTGGAAATGTGCTCTTTCGGCATCAATAGCAGTTTCTGGTTCCAAAACGACGTCGTTTAAGCGTTCGATTTTGTTCCAAGCAGTGAATCTCCGTACACGGATGAACCCCGCCGTACCGGAAACTGCAATTGGGAATTTGGTGTGGCCGTTTTCGGTGACAGTTGAAGAAGAAAGCCACGTGGCATTAGATGAGATGGTGAAAAGAATGAGGAAGGGTATAATGGACTTTATAGAGAATAAAGCAGAGAGGTTTAAAGAGGAAGGTGGGTTTAAGGTTGTGATGGAGAATTTGAAAGAGAGGGTTGAGATTTTGAAAAGGAGTAATGAGAATGAGGGTAGTTTGGTAATTTACAAATGTTCTAGTTGGTGTAAATTTCCATTGCTTGAGTTTGATGTTGGGTGGGGGAAACCTGTGTGGAGTTGTAGTGTGAATAGTTTGGTGAGTAATACAATTGCTTTGATGGATGCAAAAGATGGTAGTGGAGTTGAAGCTTTTGTTACTCTTGATGAAGATGAGATGAAATTGTTTCAACAAAATGAGGAGCTGCTACACTATGCTTTGCTTAATCCTAGAATTCTTATTTGA 1368 0.3947 MENSTSNNSYEIKLEKLNTILIKPSKPTPSHLQNFKLSLLDQLSPNIHGNTTFFYPNHNNNNNNYFSDFLNKSKLLQNSLSQTLSHFYPLAGRLHDATTIHCNDDGVFFIESQTTTTLSEILTDPNFNTLQCFLPTTEEKQNMLLLLRFTLFSCGSTAITISLTHKIVDFNTLIIFLNTWTAVATGSEIPLPDLTVAAALFPPREIPGMSASVKTSDAKFTSRRFIFEASKIEELKTKIKNKIESEFQFHPSRVEVVLALIWKCALSASIAVSGSKTTSFKRSILFQAVNLRTRMNPAVPETAIGNLVWPFSVTVEEESHVALDEMVKRMRKGIMDFIENKAERFKEEGGFKVVMENLKERVEILKRSNENEGSLVIYKCSSWCKFPLLEFDVGWGKPVWSCSVNSLVSNTIALMDAKDGSGVEAFVTLDEDEMKLFQQNEELLHYALLNPRILI 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00143 455 Gene3D - 217 446 IPR023213 -
Trre3g00143 455 PANTHER F21J9.9 18 447 - -
Trre3g00143 455 Pfam Transferase family 13 443 - -
Trre3g00143 455 Coils Coil 355 375 - -
Trre3g00143 455 Gene3D - 11 208 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00143 Trre-Chr3 976239 977606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00143 12 439 Monolignol Biosynthesis Gene Families AT5G48930 22.658 6.34e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00143 - - tpra:123896825 685.641