Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00130 ATGATGGTTTCCATGCCCAAAATTGTGTTCTTTGTTCCAATGTTACTAACCATTCTTGTTTCTTTGCAGTTCACAGATGGTAAATTCTTTCCTCCGATCATTCCTCCCCACCTTCATCTATACATTACCAACAACATAAGCAATACTCCACTCGGTGTTCACTGCAAAGACAAACATCATGATGCTGGATTTCGAACAATAAATTTTGGCGGAATTTATGAGTTCGAGTTTACCCCAACACCCATTTTTAGAGAAACCTTATGGTTTTGTCGATTTTCATGGAACGATGTATTTCAATACTTCGATATTTATGTACAAAAACGTGATGTTGATTATTGCGATAAAGAATGTCATTGGGCAATAAACAAATCTGGTCCATGTAGGGTTAGGCAAACATATTCAGAATGTTATCCTTGGAATCCAAAAGTTGTTATGTAA 438 0.3607 MMVSMPKIVFFVPMLLTILVSLQFTDGKFFPPIIPPHLHLYITNNISNTPLGVHCKDKHHDAGFRTINFGGIYEFEFTPTPIFRETLWFCRFSWNDVFQYFDIYVQKRDVDYCDKECHWAINKSGPCRVRQTYSECYPWNPKVVM 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00130 145 Pfam Plant self-incompatibility protein S1 39 139 IPR010264 -
Trre3g00130 145 PANTHER - 37 130 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00130 Trre-Chr3 891679 892116 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00130 36 144 Carbohydrate Esterase AT3G16970 36.207 2.33e-21 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00130 - - tpra:123904583 205.682