Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00122 ATGCCAAAGTCTAAGAGAAACAAACAAGTTACACTTTCAAAGACAACGAAAAAAGGAAGAGGTCACAAAGAATTAATAGTGAATGCAATAAGAGATGCAGCTGAAAATTACAATTCAGTTTATGTGTTTTCTTTTGAGAACATGAGGAACCAAAAATTGAAAGAGTTCAGAGAACAATTACAAAAAAGTAGTAGGTTTTTTCTTGGATCCAACAAAGTAATGCAAGTTGCTCTTGGTCGTTCTCCTTCTGATGAAATCAAAATCAATCTTCATAAGGTTTCAAAGCTATTGCGTGGAAATGCTGGGATGGTTTTTACGAATCTTTCAAGAGAAGAAATTGAAAGGCTGTTTAATGAATTTGAGGGATATGACTTTGCAAGAACAGGAAGCATTGCCACAGAAAAGGTGGAACTCAAGGAGGGTCCTTTAGAGCATTTCACACACGAGATGGAACCTTTTCTCCGGAAGCAAGGCATGCCTGTTCGATTAAATAAAGGAGTTGTGGAGCTTGTTTCTGACTATGTTGTTTGTGAGGAGGGAAAGCCTTTGTCACCTGAAGCATCTCGCATACTGCGTTTGATGGGAGTCATGATGGCTACATTTCGACTGCACCTGGTTTGCAGATGGAGTTCTGATGATTTTGAACTCTTAATTGATGGTCCTGGTGATTCAGATGTTGAATGA 684 0.386 MPKSKRNKQVTLSKTTKKGRGHKELIVNAIRDAAENYNSVYVFSFENMRNQKLKEFREQLQKSSRFFLGSNKVMQVALGRSPSDEIKINLHKVSKLLRGNAGMVFTNLSREEIERLFNEFEGYDFARTGSIATEKVELKEGPLEHFTHEMEPFLRKQGMPVRLNKGVVELVSDYVVCEEGKPLSPEASRILRLMGVMMATFRLHLVCRWSSDDFELLIDGPGDSDVE 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00122 227 Pfam Ribosomal protein L10 20 120 IPR001790 -
Trre3g00122 227 Gene3D - 30 212 IPR043141 -
Trre3g00122 227 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 1 218 - -
Trre3g00122 227 FunFam Ribosome assembly factor mrt4 29 131 - -
Trre3g00122 227 Gene3D - 125 198 IPR043164 -
Trre3g00122 227 SUPERFAMILY Ribosomal protein L10-like 20 144 IPR043141 -
Trre3g00122 227 FunFam Ribosome assembly factor mrt4 125 198 - -
Trre3g00122 227 CDD Ribosomal_P0_like 22 184 IPR033867 GO:0000027
Trre3g00122 227 Pfam Insertion domain in 60S ribosomal protein L10P 126 196 IPR040637 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00122 Trre-Chr3 838222 840161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00122 35 213 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 21.229 2.36e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00122 K14815 - gmx:100500064 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00122 3 838222 840161 Trre3g00122 3 838222 840161 ECH