Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00121 ATGCCAAAGTCTAAGAGAAACAAACAAGTTACACTTTCAAAGACAACGAAAAAAGGAAGAGGTCACAAAGAATTAATAGTGAATGCAATAAGAGATGCAGCTGAAAATTACAATTCAGTTTATGTGTTTTCTTTTGAGAACATGAGGAACCAAAAATTGAAAGAGTTCAGAGAACAATTACAAAAAAGTAGTAGGTTTTTTCTTGGATCCAACAAAGTAATGCAAGTTGCTCTTGGTCGTTCTCCTTCTGATGAAATCAAAATCAATCTTCATAAGCTATTGCGTGGAAATGCTGGGATGGTTTTTACGAATCTTTCAAGAGAAGAAATTGAAAGGCTGTTTAATGAATTTGAGGGATATGACTTTGCAAGAACAGGAAGCATTGCCACAGAAAAGGTGGAACTCAAGGAGGGTCCTTTAGAGCATTTCACACACGAGATGGAACCTTTTCTCCGGAAGCAAGGCATGCCTGTTCGATTAAATAAAGGAGTTGTGGAGCTTGTTTCTGACTATGTTGTTTGTGAGGAGGGAAAGCCTTTGTCACCTGAAGCATCTCGCATACTGCGTTTGATGGGAGTCATGATGGCTACATTTCGACTGCACCTGGTTTGCAGATGGAGTTCTGATGATTTTGAACTCTTAATTGATGGTCCTGGTGATTCAGATGTTGAATGA 675 0.3867 MPKSKRNKQVTLSKTTKKGRGHKELIVNAIRDAAENYNSVYVFSFENMRNQKLKEFREQLQKSSRFFLGSNKVMQVALGRSPSDEIKINLHKLLRGNAGMVFTNLSREEIERLFNEFEGYDFARTGSIATEKVELKEGPLEHFTHEMEPFLRKQGMPVRLNKGVVELVSDYVVCEEGKPLSPEASRILRLMGVMMATFRLHLVCRWSSDDFELLIDGPGDSDVE 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00121 224 SUPERFAMILY Ribosomal protein L10-like 20 141 IPR043141 -
Trre3g00121 224 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 1 215 - -
Trre3g00121 224 CDD Ribosomal_P0_like 22 181 IPR033867 GO:0000027
Trre3g00121 224 Gene3D - 122 195 IPR043164 -
Trre3g00121 224 Gene3D - 30 209 IPR043141 -
Trre3g00121 224 FunFam Ribosome assembly factor mrt4 122 195 - -
Trre3g00121 224 FunFam Ribosome assembly factor mrt4 29 128 - -
Trre3g00121 224 Pfam Insertion domain in 60S ribosomal protein L10P 123 193 IPR040637 -
Trre3g00121 224 Pfam Ribosomal protein L10 20 117 IPR001790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00121 Trre-Chr3 838222 840161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00121 35 210 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 22.346 1.61e-10 58.2