Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00116 ATGGAGAACTCGGATGAATATATTGATGTTGATTCCAACGAGGTTCATTCCACTGATGATGATACAGCTGGTGTTAAATTGAATGATGAAGAGGACGACATTTATTCTGTATCAAGTGGGTCTGAAAGTTCAAATGATAGCGATGATGCTGACAAAGGCAATGATGATAAACCGGTTGAAGTAGATGCAGTCGTAGGTGATAGAGTGGTAAATGTAAATTCAATTACTTCTGATGAAATTTTTGCTTTGGAATTTGGTACTGTTGATGAAGCGTTTGAATTTTATTATCGGTATGGTAAATGTAAAGGTTTTGCCGCTAGGAAAAGTGATAGGAGAAAAGACCCAAAAGGCAGTAAAAAACTAGTGATGAGGCAGTTTGTATGCAACAAACATGGGTACCGAGATAAGAAACACTTGTGCAAGACAGATAGGAAAAGAGAGCATAGACGTTTGACCCGTACTGGTTGCACTGCTAGGCTTCGTGTGCAATACAAACCCAAAAAGGATAGATATGTAGTGTCAATTTTTGAAGAGGGTCATAACCATGAATTAACCCCTTCTAATACTGATGATCCTATTGGGACACAAAAGTCGACTGTACGTGATCCAGTTCCGGTGAAGGGTAGAGGTGCTCCAAAGAAAAGAAAGACCGACACCAAAACTATTAGGCGTGGTGGCAGATGCGATAATACAACTCATAATGCGAGAAGTTGTTCGCGTGCTAAAAAAGCACCAGTTGGAAAAAATGTTAAGTTGGATTCAATGTCATTAACTGATTTTGTAAGCCAAACTGAGAAGAACAAGAAAAGAAAAACAAGTTGCAAGGGTGAACCAAGCGTGCAAAAGAATTGTTCAGATGGACCGCAAAATCGTGGCGATAATGTTACAATGAGACAAATTCCTTCAATGTATGCAGTTCAACCTATGATGCCTGTGATACATCCGGGAGGTCATCCGATGCAAGTGCAACCCGTGTATCCAATATATGGAATGCCCGTTGGTGAAAATTCAAATTCGTGTTTCGGCCTCCTACAACAAGTGATGAAATCTGCTGGTAAAGAATGA 1065 0.3991 MENSDEYIDVDSNEVHSTDDDTAGVKLNDEEDDIYSVSSGSESSNDSDDADKGNDDKPVEVDAVVGDRVVNVNSITSDEIFALEFGTVDEAFEFYYRYGKCKGFAARKSDRRKDPKGSKKLVMRQFVCNKHGYRDKKHLCKTDRKREHRRLTRTGCTARLRVQYKPKKDRYVVSIFEEGHNHELTPSNTDDPIGTQKSTVRDPVPVKGRGAPKKRKTDTKTIRRGGRCDNTTHNARSCSRAKKAPVGKNVKLDSMSLTDFVSQTEKNKKRKTSCKGEPSVQKNCSDGPQNRGDNVTMRQIPSMYAVQPMMPVIHPGGHPMQVQPVYPIYGMPVGENSNSCFGLLQQVMKSAGKE 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00116 354 MobiDBLite consensus disorder prediction 263 292 - -
Trre3g00116 354 MobiDBLite consensus disorder prediction 1 58 - -
Trre3g00116 354 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 12 257 - -
Trre3g00116 354 MobiDBLite consensus disorder prediction 181 247 - -
Trre3g00116 354 MobiDBLite consensus disorder prediction 277 292 - -
Trre3g00116 354 Pfam FAR1 DNA-binding domain 93 185 IPR004330 -
Trre3g00116 354 MobiDBLite consensus disorder prediction 9 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00116 Trre-Chr3 814023 815957 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre3g00116 FAR1 1e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00116 - - mtr:120578128 203.371