Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00111 ATGAAGAATAAAAGGAAAGTGATAAAATCTGAACATCTTTCAAATTTTAAGAATGATTTTATTACTAAGTCGAAGGTACGGACTTTTTCTTGTAAGTTTTGCCGGAAACAATTTGCTTCTCCACATGCATTAGGTGGACACCAGAATGCTCATAAAAAAGAGCGTGCTCATGAAAAGCATCTTCAAGGAATTAAGAATAATTTTAAAACCCCTCATTATCCTTTTCCTTACTATAATTATCCTAGTCAATCTGCACCCCCTCCTTTTTCTTACTATAATTTTCCTAATCTATCTACACCTCATCCTTTTTCTTACTATAATTCTCCTAGTGTATCACCCCTTTACCATGGATATGGATCCTATACTAGAGGACTTGAAATTAAGTTGGAGGCCATGACTCTAGGGCCTACTCCTATGTGGACATCAAAGCAAGAGATGAGAAACTTTTCTTCTAGTGATGAAGTGAAGATCGATGATCTTAATCCAAATAATGGATACAGTGCAACTCGAACATGGAGCAATATGAATGTTGTTGGAGAGTGTTCAACAAGCACGGCTACAAAGCCAAATATGGTCGTCAAAAAAGAAATATCAAGTTTAACTACTAAGCTTGATTTGTCTCTTAAACTTTGA 633 0.3539 MKNKRKVIKSEHLSNFKNDFITKSKVRTFSCKFCRKQFASPHALGGHQNAHKKERAHEKHLQGIKNNFKTPHYPFPYYNYPSQSAPPPFSYYNFPNLSTPHPFSYYNSPSVSPLYHGYGSYTRGLEIKLEAMTLGPTPMWTSKQEMRNFSSSDEVKIDDLNPNNGYSATRTWSNMNVVGECSTSTATKPNMVVKKEISSLTTKLDLSLKL 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00111 210 ProSitePatterns Zinc finger C2H2 type domain signature. 31 51 IPR013087 -
Trre3g00111 210 ProSiteProfiles Zinc finger C2H2 type domain profile. 29 56 IPR013087 -
Trre3g00111 210 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 17 210 IPR044246 GO:0009788
Trre3g00111 210 SUPERFAMILY beta-beta-alpha zinc fingers 27 57 IPR036236 -
Trre3g00111 210 Gene3D Classic Zinc Finger 9 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00111 Trre-Chr3 794789 795421 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00111 2 110 C2H2 Transcription Factor Family AT3G58070 35.135 3.23e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre3g00111 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00111 - - tpra:123896691 172.555