Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00097 ATGTCTCTCACAGGCCGTCCTCGTGTTATTGTCAACGGTGTTCGAAGAATGAGAACCTTCCATTATTTCTGGTGTCTCAATTGCCAACGTACTGTCAGAATACCGTCAACAAATACTATAACATATGGCTCTTTTTGCCCATATTGCTTCCATCAATTGCGTTATGAACTTGATATAGCAAGGCCAAGGCTTCTTATGAATGTAACTAACAACAACATGGAGCATCCTCCTCCTTCTACTAATCAGTTAATGGGTAACTTATCTTTCATTCTTGATCCATCTCTCAGAAGACAAGACCAAAACAACATAACACCACAATGGCAAACAGAACATGAAGATGATCAAAATCAAAATCCACAAGCATGGATTACACTCCGATTCGTAAGACCAACTCGTCCACCGAGGCCTATTGGACCACCGCCACAACCACAAAACTTGGCAACCCAACCCAGTGACAATGACGCCCCTTCGTTAGACGAGTTCTTTGATGGGACGATTCACAACAACAGCAGACCAGGGCCGCCTCCCGCGTCACCTTCGGCCATTGAAGCCTTGCCAATGGTGAAAGTGACAGAATCCCATTTGACAAGTGACCCGAATTGTCCAATATGCAAAGATGAGTTTGAGGTTGATGTGGAAGTGAAAGAGTTACCATGCAAACATTTCTACCATTCTGACTGCATTCTCCCTTGGTTTCGCATGCACAACACTTGCCCCGTATGCCGCCATGAGCTACAAGGGATCGATAATAGTAATACCAGTTACTACTTTTCCCATAATGAGGATGAGCAACATGGATTCATTGGGTTTGAGGAATTTACAAGCAGCATTAACTGGATCTGGAGCCAACTTGCTTTGTTTAGGCCTATTCGTGCAGTTCTAGATTGGACGCGGTCCTATTTTGAATTCCATGCACGTGCTCATAGTAGAAGTAGCTCTTGGTGGCGGGCATTGCTCATTTCATAG 966 0.4431 MSLTGRPRVIVNGVRRMRTFHYFWCLNCQRTVRIPSTNTITYGSFCPYCFHQLRYELDIARPRLLMNVTNNNMEHPPPSTNQLMGNLSFILDPSLRRQDQNNITPQWQTEHEDDQNQNPQAWITLRFVRPTRPPRPIGPPPQPQNLATQPSDNDAPSLDEFFDGTIHNNSRPGPPPASPSAIEALPMVKVTESHLTSDPNCPICKDEFEVDVEVKELPCKHFYHSDCILPWFRMHNTCPVCRHELQGIDNSNTSYYFSHNEDEQHGFIGFEEFTSSINWIWSQLALFRPIRAVLDWTRSYFEFHARAHSRSSSWWRALLIS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00097 321 MobiDBLite consensus disorder prediction 132 146 - -
Trre3g00097 321 FunFam E3 ubiquitin-protein ligase RING1-like 164 247 - -
Trre3g00097 321 Pfam Ring finger domain 200 242 IPR001841 -
Trre3g00097 321 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Trre3g00097 321 SMART ring_2 201 241 IPR001841 -
Trre3g00097 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 110 245 - -
Trre3g00097 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 247 IPR013083 -
Trre3g00097 321 SUPERFAMILY RING/U-box 181 247 - -
Trre3g00097 321 MobiDBLite consensus disorder prediction 130 180 - -
Trre3g00097 321 CDD RING-H2_RNF126-like 200 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00097 Trre-Chr3 710574 711705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00097 1 303 C3H Transcription Factor Family AT1G68180 33.007 1.58e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00097 K11982 - gmx:100793656 338.576