Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00095 ATGGGGCCAAAGTTTCCCATGAATCAGTTGAAGACACCCAGTTATTATGTCATTACTTCTTGTCACAGAAACTATTCTAGAACTATTCTCTCGGAGCAAAAATTCCCATTTAAATCTTTGGGTGATAAATGGAAGCTTAATGACCTAACTGCTAGTTCTATCCAAGAAAGATTGAATGTATTGATGTCGAGAACCCAAAACTTTTTGAATGAAGTAACTTCTCCGCTTGCCAAAACCGGTCAAAGTAAGAAGCCGGATCCTGAAAATGATCTCGGGTTTCAAGTTATGGAAGACATATTTATGGTAGAGCAAACAATTAACCGCAGAACGCCAAATGGGACTCTTTCTCTGGCTGCTGTTATATGTATTGAACAATTCAGCAGGATGAGTGGATTGACTGGGAAGAAAATGAAGAATATTTTTGAAACACTTGTTCCAGAGACTGTACATAGTAATGCCCGTAATTTGGTTGAATACTGCTGCTTTAGATTTTTGTCAAGGGACGACTCTGATATTCATCCTTCCCTCCAGGATCCTGCTTTCCAGAGGCTGATATTCATAACCATGATTGCCTGGGAAAATCCTTACACTAATTTCCTTTCCAGCAATGCAGAGAAAGCTTCTTTACAGAGTAAACTGGTCACCGAGGAGGCTTTTGCTCGTATTGCTCCTGCAGTCTCTGGTGTGGTTGACCGCCCCACAGCGCACAATCTTTTTAAGGCTCTTGCTGGTGATCAAGAGGGCATTTCTATGGGCACGTGGCTAGCTTACATTCAGGAGTTTGTCAAAGTACGTCGAGAACATAGGTCATATCAGATTCCAGAGTTTCCTCAAATTGATGCAGAGAAAATCTTATGCATTGGTTCCAACAATAAGCAGCCTGTTCTGAAATGGGAGAATAATATGGCATGGCCTGGCAAACTCACTCTTACTGATAAAGCAATCTATTTTGAGGCAGTTGGCTTATTGGGAAATAAGAGAGCCATGAGATTGGATCTTACATATGAAGGACTGCAGGTAGAGAAGGCAAAAGTTGGGCCTTTAGGGTCTTCACTTTTTGACTCTGCTGTTTCTATTTCTTCTGGTTCAGAGTCGAATTGGTGGGTGCTTGAATTCATCGATTTGGGAGGTGAGATGAGGAGGGATGTTTGGCATGCATTGATTAGCGAAGTCATTGCTTTACACAAGTTCATGCATGAGTATGTACCTGATGAGTATGGACCTAATGTTTACGGGGCTCGCAAAGGAAAGCAAAGAGCAACAGGAAGTGCCATTAATGGTATAGCTAGACTCCAGGCCCTTCAGCATTTACGGAAGTTGCTTGACGATCCTACCAAACTCGTTCAGTTCTCATATTTACAGAATGCACCAAATGGTGATATTGTCCTCCAAACTTTAGCTGTTAATTATTGGGGAAGTCAACTAGTTACAGGATTTATGAACACGCGCAATAAGCCAGAAAATCGACCTTCTAATGAAATAGATGACAGCGATAACCATGTTTTTGACATCGATGGAAGTGTCTACTTGCAGAAGTGGATGAAATCTCCATCTTGGGGGTCTAGTACTTCTGCTAGTTTTTGGAAGAACACTTCAACAAAAGGTTTAGTATTAGGTAAGAATCATGTTGTGGCTGACCTATCACTCACTGAAAGAGCAGCCAAAACAAGCAAACAGAAGACCCAGGTTGTGGAGAAGACTCAAGCCACCATTGATGCTGCAACACTGAAAGGCATACCTAGCAACATTGATCTTTTCAAGGAGCTAATATTTCCTATCACCTTAACTGTCGAGAACTTTGAAAAGCTAAGGCACTGGGAGGAGCCACACCTGACTATTGGGTTTCTTGGACTTGCCTATACAATAATTTTTAGAAACTTGCTGTCATATACGTTTCCAGTGATGCTGATGATCACGGCTGTTGGAATGCTGACAATTAGGGGACTCAAGGAGCAAGGCCGCCTTGGACGATTTTTTGGTGGAGTCACAATACGTGATCAGCCACCATCAAATACTATACAAAAGATCATTGCTGTAAAAGATGCCATGCGTGACGTTGAGAATATGACGCAGAAAGTGAATGTCTCGCTACTCAAAATACGTTCAATTTTACTTTCTGGCAATCCACAGATAACAACCGAGGTTGCTGTGCTGATGTTAACTTGGTCAGCCATTCTCTTCATTGTCCCATTCAAGTACATTCTTTCCTTTCTTCTCTTCGATATGTTTACGCGGGAGCTCGAGTTTCGGAAAGAAATGGTTAAGAGATTTATGAAACTTTTAAGAGAGCGGTGGCATGCAGTTCCTGCTGCACCAGTAACAGTTTTACCATTTGAAAATGAAGAATCTAAACCAGAAGTTTCCTTAAAGAAAATTGAGTCCAAATCAAAGTCACAAGGAAACCAGAGCAGTGGCCGTCCTCGTGTTATTGTCAACGGTGTTCGAAGAATGAGAACCTTCCATTATTTCTGGTGTCTCAATTGCCAACGTACTGTCAGAATACCGTCAACAAATACTATAACATATGGCTCTTTTTGCCCATATTGCTTCCATCAATTGCGTTATGAACTTGATATAGCAAGGCCAAGGCTTCTTATGAATGTAACTAACAACAACATGGAGCATCCTCCTCCTTCTACTAATCAGTTAATGGGTAACTTATCTTTCATTCTTGATCCATCTCTCAGAAGACAAGACCAAAACAACATAACACCACAATGGCAAACAGAACATGAAGATGATCAAAATCAAAATCCACAAGCATGGATTACACTCCGATTCGTAAGACCAACTCGTCCACCGAGGCCTATTGGACCACCGCCACAACCACAAAACTTGGCAACCCAACCCAGTGACAATGACGCCCCTTCGTTAGACGAGTTCTTTGATGGGACGATTCACAACAACAGCAGACCAGGGCCGCCTCCCGCGTCACCTTCGGCCATTGAAGCCTTGCCAATGGTGAAAGTGACAGAATCCCATTTGACAAGTGACCCGAATTGTCCAATATGCAAAGATGAGTTTGAGGTTGATGTGGAAGTGAAAGAGTTACCATGCAAACATTTCTACCATTCTGACTGCATTCTCCCTTGGTTTCGCATGCACAACACTTGCCCCGTATGCCGCCATGAGCTACAAGGGATCGATAATAGTAATACCAGTTACTACTTTTCCCATAATGAGGATGAGCAACATGGATTCATTGGGTTTGAGGAATTTACAAGCAGCATTAACTGGATCTGGAGCCAACTTGCTTTGTTTAGGCCTATTCGTGCAGTTCTAGATTGGACGCGGTCCTATTTTGAATTCCATGCACGTGCTCATAGTAGAAGTAAGATCAAACTCTAA 3348 0.4214 MGPKFPMNQLKTPSYYVITSCHRNYSRTILSEQKFPFKSLGDKWKLNDLTASSIQERLNVLMSRTQNFLNEVTSPLAKTGQSKKPDPENDLGFQVMEDIFMVEQTINRRTPNGTLSLAAVICIEQFSRMSGLTGKKMKNIFETLVPETVHSNARNLVEYCCFRFLSRDDSDIHPSLQDPAFQRLIFITMIAWENPYTNFLSSNAEKASLQSKLVTEEAFARIAPAVSGVVDRPTAHNLFKALAGDQEGISMGTWLAYIQEFVKVRREHRSYQIPEFPQIDAEKILCIGSNNKQPVLKWENNMAWPGKLTLTDKAIYFEAVGLLGNKRAMRLDLTYEGLQVEKAKVGPLGSSLFDSAVSISSGSESNWWVLEFIDLGGEMRRDVWHALISEVIALHKFMHEYVPDEYGPNVYGARKGKQRATGSAINGIARLQALQHLRKLLDDPTKLVQFSYLQNAPNGDIVLQTLAVNYWGSQLVTGFMNTRNKPENRPSNEIDDSDNHVFDIDGSVYLQKWMKSPSWGSSTSASFWKNTSTKGLVLGKNHVVADLSLTERAAKTSKQKTQVVEKTQATIDAATLKGIPSNIDLFKELIFPITLTVENFEKLRHWEEPHLTIGFLGLAYTIIFRNLLSYTFPVMLMITAVGMLTIRGLKEQGRLGRFFGGVTIRDQPPSNTIQKIIAVKDAMRDVENMTQKVNVSLLKIRSILLSGNPQITTEVAVLMLTWSAILFIVPFKYILSFLLFDMFTRELEFRKEMVKRFMKLLRERWHAVPAAPVTVLPFENEESKPEVSLKKIESKSKSQGNQSSGRPRVIVNGVRRMRTFHYFWCLNCQRTVRIPSTNTITYGSFCPYCFHQLRYELDIARPRLLMNVTNNNMEHPPPSTNQLMGNLSFILDPSLRRQDQNNITPQWQTEHEDDQNQNPQAWITLRFVRPTRPPRPIGPPPQPQNLATQPSDNDAPSLDEFFDGTIHNNSRPGPPPASPSAIEALPMVKVTESHLTSDPNCPICKDEFEVDVEVKELPCKHFYHSDCILPWFRMHNTCPVCRHELQGIDNSNTSYYFSHNEDEQHGFIGFEEFTSSINWIWSQLALFRPIRAVLDWTRSYFEFHARAHSRSKIKL 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00095 1115 ProSiteProfiles Zinc finger RING-type profile. 1001 1042 IPR001841 -
Trre3g00095 1115 PANTHER HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR (DUF639)-RELATED 66 784 - -
Trre3g00095 1115 SUPERFAMILY RING/U-box 981 1047 - -
Trre3g00095 1115 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 964 1047 IPR013083 -
Trre3g00095 1115 CDD RING-H2_RNF126-like 1000 1042 - -
Trre3g00095 1115 MobiDBLite consensus disorder prediction 794 808 - -
Trre3g00095 1115 MobiDBLite consensus disorder prediction 932 946 - -
Trre3g00095 1115 FunFam E3 ubiquitin-protein ligase RING1-like 965 1047 - -
Trre3g00095 1115 MobiDBLite consensus disorder prediction 787 808 - -
Trre3g00095 1115 Pfam Plant protein of unknown function (DUF639) 548 780 IPR006927 -
Trre3g00095 1115 SMART ring_2 1001 1041 IPR001841 -
Trre3g00095 1115 Pfam Ring finger domain 1000 1042 IPR001841 -
Trre3g00095 1115 MobiDBLite consensus disorder prediction 930 980 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00095 Trre-Chr3 703387 711521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00095 803 1102 C3H Transcription Factor Family AT1G68180 33.333 6.02e-44 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00095 - - gmx:100794179 1291.17