Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00086 ATGTATATTTTTGGAGTTAACTTTGATACATCATCTTCTAATGGGTCGTTGCTTCAACGACAATCATCAATGATCTCAAGCAACAATGATACTAATATTGTTGGTAGTTCTAGTTTTGATCCTTTTTCTAGTGTTACTTATGGTCCGCCGTCAAATACTATGTCTACTTCAGTTACAAAAGACTTGAAGAAATCTAAAAATTCTAATTGTAAAATGTCTTTTAAAGTCAATTTTTGCAAGAAACAATTTTCTTCTTCACATGCGCTGGGAGGACATCAAAACGCTCATAAGAAAGAGCGTGCTCTTGAAAAGCATTTTCAAAATAATAAGAATATTTTTGGGACCCCTCATTATCCCTCATCCTACTATAACTATAATTGTCCTAGTGTATCTACACCCTCTCCTTTTCCTTACTATAATTATCATGGATATGGATCCTATACTAGAGCACTTGAAATGCAGTTGGAGGCCATGACTCTAGAGCCTACTCCTATGTGGACACCAAAGCAAGAGATGAGAAACTTTTCTTCCAATGATGAAGTGAAGATCCTCGATCTTAATGCAAATAATGGATACATCGCAACTCCAACTTGGTGGAACAATATGAATTTTGTTGGAGAGTCTTCAACAAGTGTGGCTATAAAGGCAAATGTGGTCGTCAAAGAAGAAATATCAAATTTAACTAAGCTTGATTTGTCCCTTAAACTTTGA 711 0.3516 MYIFGVNFDTSSSNGSLLQRQSSMISSNNDTNIVGSSSFDPFSSVTYGPPSNTMSTSVTKDLKKSKNSNCKMSFKVNFCKKQFSSSHALGGHQNAHKKERALEKHFQNNKNIFGTPHYPSSYYNYNCPSVSTPSPFPYYNYHGYGSYTRALEMQLEAMTLEPTPMWTPKQEMRNFSSNDEVKILDLNANNGYIATPTWWNNMNFVGESSTSVAIKANVVVKEEISNLTKLDLSLKL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00086 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 101 IPR013087 -
Trre3g00086 236 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 29 236 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00086 Trre-Chr3 636504 638563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00086 55 122 C2H2 Transcription Factor Family AT1G24625 39.744 2.25e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00086 - - tpra:123896691 137.887