Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00085 ATGGGGAGAAGAAACAACGGCGGTGGTGGTGGTGGCGGCGGAGGGGGAAGGTCTCTGCAATTTGCTCTTCGCCGACGAGTTGAATCCTGCAAATCAAAGTACACAACCGCCGAAGAAATCGTCGATCATCTTCGCTCAAATTACCCTGATTACCACCGAACTAAGAGCCAACAACTCCTTCGATTTGTTAACGATGCTCTTCAATCTTCCAATAATACTCCCTCACGGAACCCTAACCAGAACAACGATGACGACGACGATGATGAAGAAGAGTGTCGAAATTCTTCTCGAAAGAGACGTAAGGATGTTCCTGATGAATCTGAAGCTCGATTGCAGAAAATGGAAGCTCTTCATATCAAAACAAGGATGAGTAAGGAGGTTCCATCATCTTCCTCCGAACCTGCTTCCGATAGCGGTGATGACGGTGCAGTTTCGACTTCAGAAGACGCCATTTACAGTGAGAAAGTTGAACCTGCTTTTGATTTGATGAAAGATATGCTTCGAAATTCGTATACAGGAGCGAAAACAGTACCTGTGGCGGAGGAAAAGAACGTTGAATTGGATATGGGGAATTCAAGTAAAGATACTATTACTGTTAATAAGAATGGTGGTGAATCGAAGTTGTATCGGACTACAAAGATACGATTGAAGGGTTCGGGTTCAGGTTCTAATGTTGCCGGTGGTGGTGTTGCTGATGTTGAGATGAAAGGGAAGGAAGGGCCGATGTTTAAGGATTTGGGTGGGATGAAGGATATATTGGAAGAGTTGATGATGGATATTGTGTCATTGTGCAATCCTCAATTGCCTAGACATTTGGGAGTTAAACCAGTGACTGGAATTTTGTTACATGGACCACCTGGATGTGGAAAGACTAGACTTGCTCATGCTATAGCGAATGAAACCGGTCTTCCTTTTCATCATATTTCGGCTACCGAGGTGGTTTCTGGAGTGTCAGGTGCATCCGAAGAATATATTAGAGAGCTTTTTGACAAAGCAAAAAGGACTGCTCCGTCAATTGTCTTTATTGATGAGATTGATGCAATTGCTTCAAAAAGAGAGAATTTACAGCGTGAAATGGAGAAACGAATTGTGACCCAGTTAATGACTTCCATGGATGAGCCGGAGAGTTCTGATGAACCACGTGGCTATGTTCTTGTAATTGGAGCCACAAATAGGCCTGATTCTCTTGACCCTGCTCTTAGACGGCCTGGTAGGTTTGATCGTGAGTTTTTTGTTGGTGTTCCTGATGAATCTGCCAGGGAGGAGATCCTTTCAGTGCTTACTCGCAATCTTAAACTTGATGGTTCATTTGATCTGCGCAAAATAGCCAGGTCTACGCCAGGATTTGTTGGTGCTGATTTGGCAGCTCTGGCTAACAAAGCTGGTAATCTGGCAATGAAGAGGATAATTGATGAAAGGAAACGTGAATTATCTCAAAATCTCATGAGTGAGAATACCAAAGGCTGGTGGAGAGAACCTTGGTTACCTGAAGAAATAAATAAGCTTGCTATCAAAATGTCTGATTTTGAGGAAGCAGCCAAAATGGTGCAACCTTCAGCAAGAAGAGAAGGGTTCTCTTCCATTCCTAATGTCAAATGGGAAGATGTTGGTGGGCTTGATATTATAAGGCATGAGTTTGATCGCTATATTGTAAGGCGTATAAAACATCCTGAGTATTATGAGGGAATTGGGATGAATCTTGAATCTGGATTTTTGCTTTATGGACCTCCAGGTTGTGGTAAAACACTGATTGCCAAGGCTGTTGCCAATGAGGCTGGAGCTAATTTCATTCATATTAAGGGACCTGAGCTTCTAAATAAATATGTTGGGGAAAGTGAGCTTGCAGTGCGGACATTGTTTAATCGTGCAAGGACTTGTGCACCATGTGTACTATTTTTTGATGAGGTTGATGCTCTGACTACTGAACGTGGTAAAGAAGGTGGATGGGTTATTGAAAGACTATTGAACCAGTTGCTTATTGAGTTAGATGGCGCTGAGCAGCGGAGAGGTGTTTTTGTGATTGGTGCAACAAATAGGCCTGAGGTGATGGACCGTGCTCTCTTACGGCCTGGCAGGTTTGGTAAACTGCTTTATGTTCCTCTTCCAAGTCCAGACGACCGTGTTTTGATATTGAAAGCTCTTGCAAGAAATAAACATTTTGATTCTAGTGTGGATTTGAGTGCCATTGGAAGAATGGAAGCATGTGAAAACCTTAGTGGTGCTGATCTTGCAGAATTGATGAACGAGGCAGTAATGGCTGCTCTTGATGAGAAGTTGGCCTCGATTGAGACAACCTGCGAATCATTTACCATTAGGACGAGTCATTTTGAAGTAGCACTAAGTAAAGTTTCTCCATCTGTGTCGGACAAGCAAAGGCAGTACTATGAGCGTTTGTCAAGAAGCCTTAAAGCGGCATGA 2418 0.4326 MGRRNNGGGGGGGGGGRSLQFALRRRVESCKSKYTTAEEIVDHLRSNYPDYHRTKSQQLLRFVNDALQSSNNTPSRNPNQNNDDDDDDEEECRNSSRKRRKDVPDESEARLQKMEALHIKTRMSKEVPSSSSEPASDSGDDGAVSTSEDAIYSEKVEPAFDLMKDMLRNSYTGAKTVPVAEEKNVELDMGNSSKDTITVNKNGGESKLYRTTKIRLKGSGSGSNVAGGGVADVEMKGKEGPMFKDLGGMKDILEELMMDIVSLCNPQLPRHLGVKPVTGILLHGPPGCGKTRLAHAIANETGLPFHHISATEVVSGVSGASEEYIRELFDKAKRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMTSMDEPESSDEPRGYVLVIGATNRPDSLDPALRRPGRFDREFFVGVPDESAREEILSVLTRNLKLDGSFDLRKIARSTPGFVGADLAALANKAGNLAMKRIIDERKRELSQNLMSENTKGWWREPWLPEEINKLAIKMSDFEEAAKMVQPSARREGFSSIPNVKWEDVGGLDIIRHEFDRYIVRRIKHPEYYEGIGMNLESGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFNRARTCAPCVLFFDEVDALTTERGKEGGWVIERLLNQLLIELDGAEQRRGVFVIGATNRPEVMDRALLRPGRFGKLLYVPLPSPDDRVLILKALARNKHFDSSVDLSAIGRMEACENLSGADLAELMNEAVMAALDEKLASIETTCESFTIRTSHFEVALSKVSPSVSDKQRQYYERLSRSLKAA 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00085 805 FunFam Cell division control protein 48 homolog C 415 523 - -
Trre3g00085 805 Pfam AAA+ lid domain 723 764 IPR041569 -
Trre3g00085 805 Pfam AAA+ lid domain 437 472 IPR041569 -
Trre3g00085 805 Gene3D - 415 523 - -
Trre3g00085 805 MobiDBLite consensus disorder prediction 68 150 - -
Trre3g00085 805 SMART AAA_5 567 703 IPR003593 GO:0016887
Trre3g00085 805 SMART AAA_5 276 416 IPR003593 GO:0016887
Trre3g00085 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 529 800 IPR027417 -
Trre3g00085 805 PANTHER AAA-FAMILY ATPASE 77 803 - -
Trre3g00085 805 ProSitePatterns AAA-protein family signature. 384 402 IPR003960 GO:0005524|GO:0016887
Trre3g00085 805 Pfam ATPase family associated with various cellular activities (AAA) 572 700 IPR003959 GO:0005524|GO:0016887
Trre3g00085 805 Pfam ATPase family associated with various cellular activities (AAA) 280 413 IPR003959 GO:0005524|GO:0016887
Trre3g00085 805 FunFam Ribosome biogenesis ATPase RIX7 231 413 - -
Trre3g00085 805 MobiDBLite consensus disorder prediction 124 143 - -
Trre3g00085 805 Gene3D - 529 796 IPR027417 -
Trre3g00085 805 MobiDBLite consensus disorder prediction 91 122 - -
Trre3g00085 805 ProSitePatterns AAA-protein family signature. 671 689 IPR003960 GO:0005524|GO:0016887
Trre3g00085 805 Gene3D - 702 781 - -
Trre3g00085 805 FunFam ATPase, AAA family protein 529 708 - -
Trre3g00085 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 519 IPR027417 -
Trre3g00085 805 Gene3D - 230 413 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00085 Trre-Chr3 629038 635071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00085 272 800 Calmodulin-binding Proteins AT3G56690 38.737 3.75e-122 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00085 K14571 - gmx:100809594 1082.4