Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00084 ATGGAAGAAGTAAAACATAAATCAAGGAAAGAAGACGGTGATTCTAAGAGGAGTCATCGTGATCGAGATCGTGATAGAACTGGTGAAAGAGGTAAGGATAGAAGCGATGGAAGGCACAAAGATAATAGGGAGAAGAGGGACCGTGAGTCTCGAAGACATGACAGAGAGAAAAGTACTGATTCTGAGGATAAGCATGATAGAGACAGGGAGAAGCGCAGAGATGGTAAAGAGAAGGATAGGGCACGAGTTCATGATGTTGACCGAGAAAAGAGAGACAGGAAACGGGAAAGAGATAGAGAAGAGAAAGAAAAGGAGAGAAGAATGAGGGAGAAAGAAAGAGAGAGGGAAAGAAAGGAGGAGAAAGAGAGGATTAGAGAGAAAGAAAGGGCAAGGGAAAGGGAAAGGAGGGATCATGAGAGAGAGAAGGAAAAAGAAAAGGAAAGAGATAAAGGAAGGAGAGGACGGGAGCGGGAGAAGCATAGAGAAGTTGATAGCGAAAACAGTGACGGTGAGTTGAGGGAGAGAAATAGAAAGCGACATAAGAAAGAAGACGACAGTTATAAGGGGCGGGAGAAGGAAAAGAGTTCTAGCAAGTCAAACAGGAAAGTTGATGGAATTAATGGAAGCCCTAGGAGAAAGAGCGATGGAGATGACTCTGATTCCAAAGAGAAAGAAAAAAGACTTACCCGTGAGGAGGAAATGGAAGTGGAACAAAAGAGGTTGGATGATGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCTAAAGAGGAAGCAGGAAGAGGTAGAAAGAGAAAAGCAAGGTGAAGCAAGTGTTGCTGAACTAGAGTCTGGAAAGGCATGGACACTTGAAGGGGAGGAATCTGATGACGAAGATGGAACAGGTAGACATACGAGTATGGATGTAGACGAAGACGACAAACTTGCTGATAATGAACCTAGGGAGTCAATGGTGGTAGATGTTGACAATGGAACAGTTGCAACCGATTTGCAAAATGGAGATGCTGGTGCTCCTGCAGACGATGAGATTGACCCATTGGATGCTTTCATGAATTCCATGGTTCTTCCCGAGGTTGAAAAGTTGAACAATGCTGTTAACTCAACACCTTCTGATAAAGCTTCTGACTTGAAACCTAAGGATAAAGAGGACGAGCGTAGTAATGGTCGACAATCAAGGAAAGGTTCAAATAAATCTATTGGCAGGATAATTCCCGGTGAAGAGTCCGACTCAGATTATGCAGATTCTGATGCTGAGGGGGATCCATTAGATGAAGATGACGACGAGTTTATGAAGAGAGTGAAGAAAACAAAAGTTGAAAAGCTCTCTTTAGTTGATCACTCAAAGATCGACTATATACCATTCAAAAAGAATTTCTATATTGAAGTGAAAGAGATCTCAAAGATGACTGTTGAAGAAGTTGTATTATACAGGAAGCAGTTAGAGTTGAAGATACATGGAAAGGATGTGCCCAAGCCTGTAAAGTCATGGAACCAGACTGGACTTACTAGCAAAGTTTTAGAGACAATAAAGAAGGCAAACTTTGAAAAGCCAATGCCTATTCAAGCTCAGGCGTTACCTGTAATTATGAGTGGTCGAGATTGCATAGGCATTGCCAAAACTGGGTCAGGTAAAACACTTGCTTTTGTTCTGCCAATGTTGAGGCATATAAAAGATCAGCCACCAGTTGTTGCAGGAGATGGACCTATTGGGCTTATTATGGCCCCTACAAGAGAACTTGTTCAACAGATTCATAGTGACATAAAGAAGTTCACAAAGGTAATGGGTATCAGGTGTGTTCCTGTCTATGGAGGTTCCGGTGTTGCTCAACAAATCAGTGAGTTGAAACGTGGTACTGAGATAGTAGTTTGTACTCCAGGTAGGATGATCGATATACTGTGCACCAGTAGTGGAAAAATAACTAACCTGCGTAGAGTAACTTATCTGGTCATGGATGAGGCAGATCGGATGTTTGATATGGGTTTTGAACCACAAATCACAAGAATTGTTCAGAATATTCGGCCAGATCGTCAAACTGTTCTCTTCTCTGCCACTTTCCCGCGCCAGGTTGAAATTTTGGCTCGCAAGGTTTTAAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGATATAGCACAGTTAGTTGAGGTGAGGCCAGAAAATGAGAGGTTCCTTAGACTCTTGGAACTACTTGGAGAATGGTATGAGAAAGGAAAGATTTTGGTATTTGTCCACTCACAGGATAAATGTGATGCATTGTTCAAGGATCTAATGAAACATGGCTATCCATGTCTTTCTCTTCATGGGGCTAAAGATCAGACAGACCGTGAATCCACAATATCTGATTTTAAAAGCAATGTCTGCAATTTGTTGGTTGCAACAAGTATTGCTGCCAGAGGATTAGATGTCAAGGAGCTCGAATTGGTGATCAATTTTGATGTTCCAAACCACTATGAAGATTATGTACATCGGGTTGGGCGCACTGGCCGTGCTGGCCGAAAGGGTTGTGCCATCACATTTATTTCTGAAGATGATGCAAGATATGCACCAGATCTGGTGAAAGCTTTGGAGCTATCTGAGCAGATTGTTCCTGATGATCTGAAATCCCTTGCCGATGGCTTTATGGCAAAAGTGACTCAAGGATTGGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAAGGCTGCAAAGAAAGCTCAAGCCAAAGAATATGGATTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGACGGTATTAGGAAGGCAGGAGGTGATATTTCACAGCACCCTGCTCTTGCTCAGATACTTGCTGCTACCAAAGCAAATCCTGCAATGCCTACTCCTATCACTGCACCCCAACTGATTTCAAATGGTGGGCTACCTATTTCTTTGCCATCTGTTGTTGGTCTCCAGACTCCAACAGTCTTGCCTGGGACAGGGCTACCCCTTGCTACAAATGACGGGGCAGCTCGAGCTGCATTAGCTGCTATAAACCTGCAGCACAACTTGGCAAAAATACAATCTGAAGCATTGCCAGAGCATTATGAGGCTGAGTTGGAAATAAATGATTTCCCTCAGAATGCTCGCTGGAAAGTCACACACAAGGAAACTTTAGGCCCCATTTCTGAGTGGACTGGAGCTGCTATTACCACAAGGGGACAGTATTTCCCACCTGGCAAAGTCGCAGGACCTGGGGATCGCAAACTCTACCTGTTCATTGAGGGTCCTAGTGAACAGTCAGTTAAGAGAGCCAAAGTAGAATTGAAGCGTGTTTTGGAAGACATCACCAACCAGGCTTTGCAACTACCTGGTGGAACTCAACCAGGCAAATACTCTGTTGTATAA 3405 0.4335 MEEVKHKSRKEDGDSKRSHRDRDRDRTGERGKDRSDGRHKDNREKRDRESRRHDREKSTDSEDKHDRDREKRRDGKEKDRARVHDVDREKRDRKRERDREEKEKERRMREKERERERKEEKERIREKERARERERRDHEREKEKEKERDKGRRGREREKHREVDSENSDGELRERNRKRHKKEDDSYKGREKEKSSSKSNRKVDGINGSPRRKSDGDDSDSKEKEKRLTREEEMEVEQKRLDDEMEKRRRRVQEWQELKRKQEEVEREKQGEASVAELESGKAWTLEGEESDDEDGTGRHTSMDVDEDDKLADNEPRESMVVDVDNGTVATDLQNGDAGAPADDEIDPLDAFMNSMVLPEVEKLNNAVNSTPSDKASDLKPKDKEDERSNGRQSRKGSNKSIGRIIPGEESDSDYADSDAEGDPLDEDDDEFMKRVKKTKVEKLSLVDHSKIDYIPFKKNFYIEVKEISKMTVEEVVLYRKQLELKIHGKDVPKPVKSWNQTGLTSKVLETIKKANFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDIAQLVEVRPENERFLRLLELLGEWYEKGKILVFVHSQDKCDALFKDLMKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEDDARYAPDLVKALELSEQIVPDDLKSLADGFMAKVTQGLEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEDKSDSEDEDDGIRKAGGDISQHPALAQILAATKANPAMPTPITAPQLISNGGLPISLPSVVGLQTPTVLPGTGLPLATNDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGKVAGPGDRKLYLFIEGPSEQSVKRAKVELKRVLEDITNQALQLPGGTQPGKYSVV 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00084 1134 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 652 660 IPR000629 -
Trre3g00084 1134 Pfam DEAD/DEAH box helicase 522 693 IPR011545 GO:0003676|GO:0005524
Trre3g00084 1134 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 734 878 IPR001650 -
Trre3g00084 1134 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 569 855 IPR027417 -
Trre3g00084 1134 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 497 525 IPR014014 GO:0003724
Trre3g00084 1134 MobiDBLite consensus disorder prediction 412 428 - -
Trre3g00084 1134 CDD DEADc_DDX46 486 707 - -
Trre3g00084 1134 MobiDBLite consensus disorder prediction 1 275 - -
Trre3g00084 1134 SMART helicmild6 758 839 IPR001650 -
Trre3g00084 1134 SMART ultradead3 516 721 IPR014001 -
Trre3g00084 1134 CDD KH-I_AtRH42_like 1032 1133 - -
Trre3g00084 1134 Pfam Helicase conserved C-terminal domain 731 839 IPR001650 -
Trre3g00084 1134 MobiDBLite consensus disorder prediction 283 320 - -
Trre3g00084 1134 PANTHER RNA HELICASE 431 917 - -
Trre3g00084 1134 MobiDBLite consensus disorder prediction 913 927 - -
Trre3g00084 1134 MobiDBLite consensus disorder prediction 1 430 - -
Trre3g00084 1134 Coils Coil 231 265 - -
Trre3g00084 1134 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 528 706 IPR014001 -
Trre3g00084 1134 MobiDBLite consensus disorder prediction 376 394 - -
Trre3g00084 1134 Gene3D - 450 706 IPR027417 -
Trre3g00084 1134 MobiDBLite consensus disorder prediction 913 945 - -
Trre3g00084 1134 CDD SF2_C_DEAD 718 848 - -
Trre3g00084 1134 FunFam probable ATP-dependent RNA helicase DDX17 459 709 - -
Trre3g00084 1134 Coils Coil 83 148 - -
Trre3g00084 1134 Gene3D - 707 881 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00084 Trre-Chr3 621827 625318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00084 484 859 Eukaryotic Initiation Factors Gene Family AT3G19760 33.158 6.29e-60 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00084 K12811 - gmx:100784306 1551.57