Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00083 ATGTCTGAAGAGGTTGGATCCATGTTGGCAGTTTATGATGATCCCTCTGACCAACATTCACTCTCTTTCGGCGGCGATACAAGCAGCACCGAGGAATCTCCTGGTGAAACCAGACTCTCATTGCAACCAACTAATGATCACGTTCCATACATTGGTCAAAGATTTTCCACCCATGATGAAGCTTATGAATTCTACAGTGATTTTGCCAAAAGTTGCGGCTTCTCAATTAGACGTCACCGCACAGAAGGAAAAGATGGTGTTGGCAAAGGACTTACTAGACGCTACTTTGTTTGTCATCGTGCTGGCAACACTCCTGCTAAATCAACAACTGAAACTAAACCTCAAAGAAATAGAAAATCTTCTCGTTGTGGTTGTCAGGCTTATATGCGGATAAGCAAAACGACGGAATTTGGACCTCCAGAATGGCGTGTCACTGGTTTTGCTAACCACCATAATCATGAACTTTTGGAACCAAACCAAGTTCGGTTCCTTCCTGCATATAGAACTATATCAGATGTTGACAAAAACCGAATCCTTATGTTTGCCAAAACAGGGATTTCTGTTCATCAAATGATGAGGCTTATGGAGCTTGAGAAGTGCGTGGAACCAGGATATTTGCCTTTTACTGAAAAGGATGTAAGGAATTTACTCCAGTCGTTTAGAAAATTAGATCCAGAAGAAGAAACCCTAGATCTGTTAAGAATGTGCAGAAATATTAAGGAGAGAGATCCTAATTTTAAATTCGAGTACACACTTGATGCTAACAACCGTTTAGAAAATATTGCCTGGTCATATGCCTCGTCGATCCAATTGTACGATATCTTTGGTGATGCCGTGGTATTTGATACAACACATCGTCTGACTGCATTTGACATGCCGCTGGGGATATGGGTTGGCATAAATAATTATGGAATGCCCTGCTTCTTTGGCTGTGTGCTACTGCGAGATGAAACTGTCAGGTCATATTCCTGGGCAATAAAGGCTTTCTTAGGTTTTATGAATGGGAAGGCTCCACAAACTATATTAACCGACCAAAACATTTGTCTCAAAGAAGCACTATCTGCAGAAATGTCGATAACAAAACATGCTTTCTGCATATGGATGATAGTTGCAAAGTTTCCATCTTGGTTCAATGCTGTTCTAGGGGAACGCTACAATGAGTGGAAGGCTGAATTTTATAGACTTTATAATCTTGAATCAGTTGAGGATTTTGAACTAGGGTGGAGGGAAATGGTATGTTCTTTTGGGCTGCATTCCAATCGGCACATGGTTAATTTATATAGCTCGCGCTCACTTTGGGCATTGCCATATTTAAGAAGCCATTTTCTTGCGGGAATGACTACAACTGGCCAGTCAAAGTCAATTAATGCCTTCATTCAACGGTTTCTAAGTGCACAGACACGACTTGCTCACTTTGTTGAACAGGTAGCTGTTGCTGTGGATTTTAAAGATCAAACTGGAGAACAACAAACCATGCAGCAGAATCTCCAAAATGTCTGCCTCAAAACAGGAGCCCCCATGGAATCACATGCTGCTACGGTCCTCACTCCTTTTGCCTTTTCCAAGCTTCAAGAACAACTTGTGTTGGCTGCACATTATGCATCTTTTTCAGTTGAAGATGGTTTTCTTGTGAGACATCACACAAAAGTTGAAGGAGGTCGCAAAGTTTATTGGTCCCCTCATGAAGGAATTATAAGCTGCAGCTGTCACCAGTTTGAATTTTCTGGAATTTTGTGTAGGCACTCTCTGAGAGTTCTTTCAACAGGAAATTGTTTTCAGATCCCAGATGCATATCTTCCCATTCGATGGCGTCGTATCAGCGTGCCTTCTTCTAAGCTTCTTCAAAATGCACCCAACGATCATGCCGAAAGAGTTAAGTTATTCCAAAATATGGTTTCATCTCTAATTACAGAATCTGCCAAGTCTAAAGAACGATTAGATATTGCAACAGAACAAGTTTCCATTCTTCTGTCTCGCATAAGAGAGCAACCAATTTCATTACAATGTGCCAGAGATATTTCTACCATTAATAGGAATCTATGA 2043 0.4097 MSEEVGSMLAVYDDPSDQHSLSFGGDTSSTEESPGETRLSLQPTNDHVPYIGQRFSTHDEAYEFYSDFAKSCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPAKSTTETKPQRNRKSSRCGCQAYMRISKTTEFGPPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDVDKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEETLDLLRMCRNIKERDPNFKFEYTLDANNRLENIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCVLLRDETVRSYSWAIKAFLGFMNGKAPQTILTDQNICLKEALSAEMSITKHAFCIWMIVAKFPSWFNAVLGERYNEWKAEFYRLYNLESVEDFELGWREMVCSFGLHSNRHMVNLYSSRSLWALPYLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNVCLKTGAPMESHAATVLTPFAFSKLQEQLVLAAHYASFSVEDGFLVRHHTKVEGGRKVYWSPHEGIISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDAYLPIRWRRISVPSSKLLQNAPNDHAERVKLFQNMVSSLITESAKSKERLDIATEQVSILLSRIREQPISLQCARDISTINRNL 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00083 680 Pfam SWIM zinc finger 562 588 IPR007527 GO:0008270
Trre3g00083 680 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 42 654 IPR031052 GO:0006355
Trre3g00083 680 ProSiteProfiles Zinc finger SWIM-type profile. 554 590 IPR007527 GO:0008270
Trre3g00083 680 Pfam MULE transposase domain 279 371 IPR018289 -
Trre3g00083 680 SMART 26again6 565 592 IPR006564 GO:0008270
Trre3g00083 680 MobiDBLite consensus disorder prediction 1 46 - -
Trre3g00083 680 Pfam FAR1 DNA-binding domain 63 156 IPR004330 -
Trre3g00083 680 MobiDBLite consensus disorder prediction 20 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00083 Trre-Chr3 616338 618965 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre3g00083 MULE 1.9e-16 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00083 - - gmx:100810717 1293.87