Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00080 ATGGAGAAGATTGTTGTTGTGATGATGTTTATGTTTCTAAGCATAAACATGATGATGATGATGAGTATTTCAGCAGCTCCTACTCCTTCTCCATCCACATGTCCTATGGACCTTAACTATGTTCTCAGAATCCATTGGAATTCTTCTGCTTGTCAAAATTTTGACTCAAAAAAAGAAGTAAACTCATCAAGCACATGTTGCATATCACTTTTATCACTTTTTGGAATAGGATTTGCCCAACATCTTAAAGAAACTTCTCAATTCAATCTTCAAGACCTTCAAACATCAATTTCATGCATGCATGATTTCCAATCAAAGCTTAGTTCTTTATCACTTTCAAACAACCTTGTCAACTCTTGCTTTGACCCTCAACAATTTGTTATCTCCCGTAACTTTTGTGCAGCTGCTGGTTTACAGATTAAGCAGAAGCTTGTTTCAATTGATGGTAATGCTTCAAATTCATTGAATTGTTTCTACTTTACAATTCTTTATGCTGCTGGAATTGTGAATGAGTTTGGACCTGAAAGTAATGGTGCTGTTACTTGTGCTTTTAGTGTACCTGTTTATTCACAAGTTGGTTCTAGTTCAAAGGGTCATCAGGGTCTTGTGTTTGGTTTAACAGGAGCTGGTGTTGCATTATTTGTTATGTGTTCTTTGTTGGGTTTATATGTTTGGTTTGATAGAAAACGTATGAGGAAGAGAAAGCTTGAAACTTTTCAATTTGATTTTGATCCTGAGGAACAAGGTTCTAGGCGTAGATTAAGGCCTAATACAGGTTCAATTTGGTACAAAATTCAGGAACTTGAGAAGGCTACTGATAATTTTTCATCCAAAAATTTCATAGGGAGAGGTGGGTTTGGTTTGGTTTTTAAAGGAACTTTGGCTGATGGATCTGTTGTTGCTGTTAAGAAAGTTTTAGAATCTGATTTTCAAGGGGATGCTGAGTTTTGTAATGAAGTTGAGATTATTAGTAATCTTAAGCACAGGAATTTGTTGCCTCTTAGAGGTTGTTGTGTGGTTGATGAGAATGAGAAGTGTGCTACTGATAAGGGAAGTCAAAGATATCTTGTTTATGATTATATGCCAAATGGAAACTTGGAAGATCATCTTTTTGTATCAAAGGATCCTCAAAAAGCAAACAAATCATTGACTTGGCCTCTTAGGAAAAACATTATCTTGGATGTGGCTAAGGGTTTGGCTTATTTGCACTATGGAGTTAAGCCTGCAATTTATCATAGGGATATCAAAGCAACCAATATACTACTTGATGAAGATATGAGAGCAAGAGTTGCTGATTTTGGACTTGCTAAACAAAGCAGGGAGGGTCAGTCTCATCTCACTACTAGAGTTGCCGGAACTCATGGATATTTAGCGCCGGAATATGCGCTTTATGGTCAACTGACTGAGAAGAGTGATGTCTATAGCTTTGGTGTGGTTGTTTTGGAGATAATGTGTGGGAGGAAGGCTCTTGATTTGTCTTCATCAGGATCGCCGCGAGCGTTCTTGATCACGGATTGGGCTTGGTCACTAGTGAAATCGGGGAAAATAGATGAGGCTTTGGATGCTTCTCTTTTGAAAGACGATAACAACGCTAGTGCAAATCCCAAGAGCATAATGGAAAGGTATTTGCTTGTTGGAATTCTATGTTCTCATGTAATGGTTGCTTTAAGGCCAACAATTTCAGATGCTTTGAAGATGATGGAAGGTGATATCGAGGTTCCTCAAATTCCAGATAGACCTATGCCTCTTGGACATCCTTCATTTTATAATAATGATAGCAATGGCAACACTTTTAGCATATCCCCGGCATTAAGCGGCCTCAAATTGCAAGCTGGAGACATGCTCAGGTCCATTAGTGAGAGATGA 1866 0.3805 MEKIVVVMMFMFLSINMMMMMSISAAPTPSPSTCPMDLNYVLRIHWNSSACQNFDSKKEVNSSSTCCISLLSLFGIGFAQHLKETSQFNLQDLQTSISCMHDFQSKLSSLSLSNNLVNSCFDPQQFVISRNFCAAAGLQIKQKLVSIDGNASNSLNCFYFTILYAAGIVNEFGPESNGAVTCAFSVPVYSQVGSSSKGHQGLVFGLTGAGVALFVMCSLLGLYVWFDRKRMRKRKLETFQFDFDPEEQGSRRRLRPNTGSIWYKIQELEKATDNFSSKNFIGRGGFGLVFKGTLADGSVVAVKKVLESDFQGDAEFCNEVEIISNLKHRNLLPLRGCCVVDENEKCATDKGSQRYLVYDYMPNGNLEDHLFVSKDPQKANKSLTWPLRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDEDMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKSGKIDEALDASLLKDDNNASANPKSIMERYLLVGILCSHVMVALRPTISDALKMMEGDIEVPQIPDRPMPLGHPSFYNNDSNGNTFSISPALSGLKLQAGDMLRSISER 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00080 621 CDD STKc_IRAK 281 569 - -
Trre3g00080 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Trre3g00080 621 FunFam probable receptor-like protein kinase At1g11050 237 360 - -
Trre3g00080 621 Pfam Protein kinase domain 277 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00080 621 ProSitePatterns Protein kinases ATP-binding region signature. 281 304 IPR017441 GO:0005524
Trre3g00080 621 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 361 575 - -
Trre3g00080 621 Gene3D Phosphorylase Kinase; domain 1 246 360 - -
Trre3g00080 621 SUPERFAMILY Protein kinase-like (PK-like) 256 567 IPR011009 -
Trre3g00080 621 ProSiteProfiles Protein kinase domain profile. 275 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00080 621 Gene3D Transferase(Phosphotransferase) domain 1 361 575 - -
Trre3g00080 621 SMART serkin_6 275 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00080 621 PANTHER OS01G0750732 PROTEIN 46 575 - -
Trre3g00080 621 Pfam SPARK 30 136 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00080 Trre-Chr3 589065 591563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00080 30 616 Receptor kinase-like Gene Family AT1G11050 61.280 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Trre3g00080 Pkinase 2.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00080 - - gmx:100806560 950.273