Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00072 ATGGAGAATAATTTTAGTTCATATAATCCTCTTCATGACTTAGCCTCTAGCTTGAAGAGAAAGCACCATCATGCAGAGCATCTTCATGATGTTAAAGAAGATTATACATCTTCTTCATCTTTCAATCTAAGGAATGTTTCAAAGCTCATTCTTCCTCCACTTGGTGTTTCAAAGCAAAATCCAGTTTGCTCAAAAGGGTGGATCATATCCCCTATGGATTCTAGATACAGGTGTTGGGAGAGTTTTATGGTAGTTTTGGTAGCTTATTCTGCATGGGTTTATCCCTTTGAAGTTGCTTTCATGCATTCTTCTCCAAATAGCAAACTCTGCAAGGTGGACAATATTGTTGATCTTTTCTTTGCTGTTGATATTGTTTTGACATTCTTCGTCGCATACATTGATCGAACAACTCATCTACTTGTTCGAGATTCCAAAAAAATTGCTGTCAGGTACTTGTCAACATGGTTCCTAATGGATGTGGCATCAACTATACCATATGAAGCAATAGGCTTTTTTTTAACTGGAAAACACAAATTGGGTCTACCTTACTTCCTCTTGGGAATGCTCAGATTTTGGAGGATCAGACGTGTCAAGCAATTCTTCACAAGGCTTGAGAAAGACATCAGGTTCAACTATTTCTGGGTCAGATGTGCTAGGCTTCTTTCTGTAACACTTTTTTCAGTACATTGTGCCGGGTGCTTGTATTACATGCTAGCTGATATGTACCCTCATGAAGGAAAGACATGGATTGGAGCTGTGATTCCAAACTTTAGAGAGACAAGCCCTCGAATCAGATATATTTCCGCCATTTACTGGTCCATCACTACCATGACAACTGTTGGCTATGGTGACCTTCATGCTGTCAACACTATGGAAATGATTTTCATTATTTTCTACATGCTCTTCAACCTTGGTCTAACTGCTTACTTGATTGGTAACATGACAAATCTTGTTGTTGAAGGAACTCGTCGCACCATGGAATTTAGAAATAGTATTGAAGCAGCATCAAACTTTGTGTGCCGAAACCGGTTGCCTCCAAGGTTAAAGGAACAGATCCTAGCTTACATGTGTTTAAGATTTAAGGCAGAGAGCTTGAATCAACATGAACTAATTGAACAGCTACCAAAGTCAATTTGCAAAAGCATCTGCCAGCATTTGTTTTTTCCAACTGTAGAGAAAGTTTATCTCTTCCAAGGCGTCTCAAAAGAAATCCTTTTGTCCCTCGTTGCAAAAATGCAGGCAGAATACATACCACCTAGAGAGGATGTTATAATGCAAAATGAATCACCAGATGATGTTTATATTATAGTGTCAGGAGAAGTAGAGATCATTGATAGTGTAATAGAGAAAGAGAGAACTTTAGGGACTCTAACAACAGGAGACATGTTCGGCGAAGTTGGTGCACTCTGTTGTAGGCCTCAGAGCTTTACCTACAGAACCAAGACTCTCACACAACTTCTGAGGGTGAAAACCAATACTCTTATTGAAGCAATGCAGATTAAAAAAGAAGACAATATACTAATACTCAAAAATTTCCTTCAGCATTTCAAGCAGCTTAAGGATTTGAGTATCAAAGATTTAATGGTGGAAAATGCGGAAGAAGAGGACCCTAACATGGCAGTGAATTTGTTAACTGTGGCCAGCACAGGTAATGCTGCTTTTCTTGAGGAGCTTCTGAGAGCAGGTCTGGATCCTGACATTGGAGACTCAAAAGGGAAAACTCCATTGCACATAGCAGCATCAAATGGGCATGAAGAGTGTGTTAAAGTCTTGCTCAAGCATACATGCAACATACATATAAAAGATATCAATGACAACACTGCACTGTGGTATGCTATAGCATCAAATCATTACTCAATATTCAGAATCCTCTATCAGCTATCTGCTCTTTCTGATCCATACACAGCAGGAAATCTCCTATGTGTAGCAGCAAAAAGAAATGATTTAACAGTGATGAATGAGCTTTTAAAACAAGGACTAAACATCGACTCCAAAGATCGACATGGCATGACAGCTATACAAATTGCAATGGCAGAAAATCTTGTGGACATGGTTCAATTGCTTGTCATGAACGGTGCAGATGTCGCTGATGTGCATGTTCACGAATTTTCTGCTTCCACCTTAAATGAAATGCTGCAGAAACGCGAAATCGGGCATCTAATTAATGTGAGTGAGGCAATGGCTAGTGAGTTTGTATTAAAGGGGCAAAATCAAAAAGAACAGAAGCAGGTTTGGGGAAGATTTAATGGACTAGAGTGTCCAAGGGTAAGCATATATAGAGGTCACCCAGAAGTGAGAAGAGAAAAAGGTTTTATTGAAGCTGGAAAGTTAATAAGGCTGCCTGATTCATTGGAGAAGCTCAAAATTATTGCAGGTGAAAAATTTGGGTTTGATGCAAGAGATGCAATGATGACAAATGAAGAAGGAGCAGAAATAGACAGTATTGATGTGATCAGAGATAATGATAAACTTTTTTTTGTTGAAGAGGCTATTGATGCAAAATGCCAAGTGTAA 2514 0.389 MENNFSSYNPLHDLASSLKRKHHHAEHLHDVKEDYTSSSSFNLRNVSKLILPPLGVSKQNPVCSKGWIISPMDSRYRCWESFMVVLVAYSAWVYPFEVAFMHSSPNSKLCKVDNIVDLFFAVDIVLTFFVAYIDRTTHLLVRDSKKIAVRYLSTWFLMDVASTIPYEAIGFFLTGKHKLGLPYFLLGMLRFWRIRRVKQFFTRLEKDIRFNYFWVRCARLLSVTLFSVHCAGCLYYMLADMYPHEGKTWIGAVIPNFRETSPRIRYISAIYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPPRLKEQILAYMCLRFKAESLNQHELIEQLPKSICKSICQHLFFPTVEKVYLFQGVSKEILLSLVAKMQAEYIPPREDVIMQNESPDDVYIIVSGEVEIIDSVIEKERTLGTLTTGDMFGEVGALCCRPQSFTYRTKTLTQLLRVKTNTLIEAMQIKKEDNILILKNFLQHFKQLKDLSIKDLMVENAEEEDPNMAVNLLTVASTGNAAFLEELLRAGLDPDIGDSKGKTPLHIAASNGHEECVKVLLKHTCNIHIKDINDNTALWYAIASNHYSIFRILYQLSALSDPYTAGNLLCVAAKRNDLTVMNELLKQGLNIDSKDRHGMTAIQIAMAENLVDMVQLLVMNGADVADVHVHEFSASTLNEMLQKREIGHLINVSEAMASEFVLKGQNQKEQKQVWGRFNGLECPRVSIYRGHPEVRREKGFIEAGKLIRLPDSLEKLKIIAGEKFGFDARDAMMTNEEGAEIDSIDVIRDNDKLFFVEEAIDAKCQV 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00072 837 Gene3D - 540 722 IPR036770 -
Trre3g00072 837 PRINTS EAG/ELK/ERG potassium channel family signature 310 319 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre3g00072 837 PRINTS EAG/ELK/ERG potassium channel family signature 124 133 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre3g00072 837 PRINTS EAG/ELK/ERG potassium channel family signature 292 303 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre3g00072 837 PRINTS EAG/ELK/ERG potassium channel family signature 113 123 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre3g00072 837 PRINTS EAG/ELK/ERG potassium channel family signature 266 283 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre3g00072 837 SUPERFAMILY cAMP-binding domain-like 323 514 IPR018490 -
Trre3g00072 837 ProSiteProfiles Ankyrin repeat region circular profile. 571 602 - -
Trre3g00072 837 Gene3D - 77 319 - -
Trre3g00072 837 CDD CAP_ED 396 499 IPR000595 -
Trre3g00072 837 ProSiteProfiles cAMP/cGMP binding motif profile. 396 515 IPR000595 -
Trre3g00072 837 FunFam Potassium channel KAT2 384 520 - -
Trre3g00072 837 PANTHER POTASSIUM CHANNEL AKT1 42 829 IPR045319 GO:0005249|GO:0006813
Trre3g00072 837 SMART ANK_2a 635 664 IPR002110 GO:0005515
Trre3g00072 837 SMART ANK_2a 604 634 IPR002110 GO:0005515
Trre3g00072 837 SMART ANK_2a 571 600 IPR002110 GO:0005515
Trre3g00072 837 SMART ANK_2a 668 697 IPR002110 GO:0005515
Trre3g00072 837 SMART ANK_2a 538 567 IPR002110 GO:0005515
Trre3g00072 837 PRINTS Ankyrin repeat signature 684 698 IPR002110 GO:0005515
Trre3g00072 837 PRINTS Ankyrin repeat signature 572 587 IPR002110 GO:0005515
Trre3g00072 837 ProSiteProfiles Ankyrin repeat profile. 668 700 IPR002110 GO:0005515
Trre3g00072 837 Pfam Ion transport protein 77 325 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre3g00072 837 FunFam Potassium channel KAT3 78 320 - -
Trre3g00072 837 Pfam Cyclic nucleotide-binding domain 416 499 IPR000595 -
Trre3g00072 837 Gene3D Jelly Rolls 363 539 IPR014710 -
Trre3g00072 837 Pfam KHA, dimerisation domain of potassium ion channel 754 826 IPR021789 -
Trre3g00072 837 ProSiteProfiles Ankyrin repeat profile. 571 603 IPR002110 GO:0005515
Trre3g00072 837 ProSiteProfiles KHA domain profile. 755 837 IPR021789 -
Trre3g00072 837 Pfam Ankyrin repeats (3 copies) 547 626 IPR002110 GO:0005515
Trre3g00072 837 SUPERFAMILY Ankyrin repeat 537 705 IPR036770 -
Trre3g00072 837 SMART cnmp_10 396 513 IPR000595 -
Trre3g00072 837 ProSiteProfiles Ankyrin repeat region circular profile. 668 695 - -
Trre3g00072 837 SUPERFAMILY Voltage-gated potassium channels 71 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00072 Trre-Chr3 510639 517551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00072 13 576 Ion Channels AT4G22200 73.509 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00072 K21867 - gmx:100798422 1392.1