Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00066 ATGCAACAACAACAACAACAACAACGTCAATCCAATTCATCCCATGCTCCTCAGCACAATTGGTTGCAGCATGCCAATTCTCACAAAAATTTCTCGTGTCAGGCCAAGTTTTTGAGCTCCAATTTCCTCTTTTCTGACCCAACTAAGAAACCAATCCATGCGGCTGGTAATAGCAGGTTTGCAGTCCGACAAGGTCAAAATATTCAAAGACCACAGGTTGAGAAGGCTTGGCTTGCTCTTTCAAGTCTAAAGATATCTAGTAGGAATTATGTCCAACCTGGAAAATCTGTTAAAGTTACTCCTCAGTTTCACGAAGACAGGACAACAACTTCCTTCCAAGGAAGCTATGAGAATGTCAATCTTAACCGGGCTGATGTCACCGCAACTCCAACCGTCATTAATCATACTTCTCGGGTTATAGATAGTTCAGTGAACTATCACACAAAGTACACAAGCCCACCCAACGAGTCAGCAAAATGTGTAGCTGATAATATTAATATTAATGTCGATGACGACGACATACTCGAGAACATTGATGTTGACCAAATTGTTGAGAAATACCAGTCCACTTGCACTCCTCAACCTCTGGTGTCCAAATTTCCTCCTGTGACACCATTTGCAGATAAGGTTAATTTTGTCGGGCAGGGGGATACTTCTTTGCCACCAGAGTTGTGCTTGGATTGCATCCACGGATACAAGTTAGGGCTATGTCCTGAAGCAGCAAGTCATTTGCAGGAATTTAAGGATAATCTTATTGCTATCTCTAACGAACTGATTGACAATGTTGAAAATATCAGTTCTGTGCAGATAGCAAAGCTTCGCGAAGACAGGTCACAGCTGAATAAGCAAATTCAACAACTTGAAAAATATATTAATTCCAGTAATCTTGAAGAAGAAAGACAAAAGTCAAATTTTGCCACATCCATGGCACCACCTACATCTTTTGTTTATGAAACACCCCAGCGAAATGTCATCAGTAGTGGACCAAACAGATATGACGGCCAGGCTTATATGGGTAATGATACATATGAGCCATCATACCAGTCTTCGTATTTCATGCCATCAGGTCCAGTGGAGAGAGAACCATTCATCCCAAAGATTATAGAAGTTAATTACATTGAAGGTTCTGGAGATAAACGGTGGAGCAGCCGGGACTTTTCTTGGACTAAAGAGTTGGAGGTTAATAATAAGAGAGTATTTGGAAATCACTCATTTCGCCCCAACCAAAGAGAGGTAATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACCGGTGGAGGAAAAAGTCTGACCTATCAGCTACCAGCTCTCATTAATCCTGGTATAACACTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACCTATTGCAGGCAAATATACCTGCTGCTTACTTAAGTGCCAATATGGAATGGGCTGAACAGCAGGATATCCTTAGAGAACTTAACTCTGATTATTGTAAATACAAGTTGTTATATGTGACACCCGAAAAGGTTGCCAGAAGTGACGTTCTTCTACGACACTTGGAGAGTTTACATGTTCGTGAGTTGCTTTCAAGGATTGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTGTATTGAAACAGAAATTCCCAAATACTCCCGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTTGGTCTTGTTAACTGCATTGTTTTTCGGCAAAGTTTTAATCGCCCAAATTTACGGTATTCCGTTGTCCCCAAGACCAAAAAGTGTTTGGAGGATATTGACAAATTTATCAGGGCAAATCATTTTGATGAATGTGGCATCATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGTGGGCATAAATGTGCATTTTATCATGGGAGCATGGATCCTGATCAACGTGCTTTTGTTCAAAGGCAATGGAGCAAAGATGAGATCAATATAATTTGTGCTACCGTGGCATTTGGAATGGGGATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGCGGACGAGCCGGTAGAGATGGTCAGAGTTCCTCATGTGTATTGTATTATAGCTACAGTGACTATATCCGAGTTAAGCATATGTTAAGCCTAGGAGCAATAGAGCAAAGCCCCATGCCATCTGGATACAGTCGTTCAAATGCGATAAATTCAGGAAGGATACTGGAAACAAACACTGAAAACCTTTTGCGCATGGTCAGTTATTGTGAAAATGATGTGGATTGTCGGCGCCATATTCAGCTCGTTCATTTTGGGGAGAAGTTTGATTCTTCAGCCTGTCAGAAAACATGTGATAATTGTGTGAAGGTCACAAGTTTCGTTGAGAGGGATGTCACCGAAATTGCAAAACAATTGGTTGAACTCGTTAAGCTAACGGGACAGAAGGTCTCAGCATCTCATATATTAGAAGTGTTTCGTGGTTCCTTCAGCCAGATGGTCAAGAAACACCGACATGAGACTGTGCGTCTTCATGGTGCTGGGAAGCATCTAGCCAAGGGTGAGGCTTCCCGTATATTGCATCATCTTGTCGTTGAGGATTTTCTTGCGGAGGAGGTAAAGAAAAGTGATTTTTATGGATCAGTATCATCAGTATTGAAGGTAAATGAGACGAAGGTCCGTAATGTGTTGTTTGGTGGCCAAAGAATTATATTGAGATTCCCGTCTTCTGTGAAACCATCAAAGCCTGGGAAATGTGATATAACTCCAGCCAAAGGTTCTCTGACTTCTGGGAAGCTGAATCTTCCCATTGACATTCCTGACCAACCTCAAACTGAAGTAGACGTGAATCTAGCAGCTAATTTGTACACTGCTCTGAGGATGTTGCGGACAGCTCTTTGTAGAGAAGCTGGAGAGGGTGTTATGGCTTACCACATATTTGGCAATGCTACTTTGCAGCAGATAAGCAAGAGACTACCAAGAACAAAAGAAGAACTTCTTGATATCAATGGCATTAGCAAGACTAAAGTGAGCAAGTATGGGGATCGGTTACTGGAAACCATTGAGAAAACCATAAATGAATATTACCATACAGATAAAAACAGCAGCGGCAGCAAAGGTAGTACTGATTCAGCCAAAAGAAGGCGAGAGGCAAATAGAGATCCAGATTCAAATGCGGAGGGGGATGATGATGATGATGATTCCTTAATCAAAAGTACCGGTCGCTCCAAGAAAAGGACGGTAAGGAGACAAATTAAAAAGGCTGAAATATATGATTCAGAAGAGGAAGATTATTACCATGGATGCCTTGATGAGGACCTAGACTGTATCAATATTGAAGATGAGGCATTAGATAAAGTAACTGGTACAGATGCTGCAGGAAGAGTACTACCGCAATGGACAGCATCTTGA 3480 0.4135 MQQQQQQQRQSNSSHAPQHNWLQHANSHKNFSCQAKFLSSNFLFSDPTKKPIHAAGNSRFAVRQGQNIQRPQVEKAWLALSSLKISSRNYVQPGKSVKVTPQFHEDRTTTSFQGSYENVNLNRADVTATPTVINHTSRVIDSSVNYHTKYTSPPNESAKCVADNININVDDDDILENIDVDQIVEKYQSTCTPQPLVSKFPPVTPFADKVNFVGQGDTSLPPELCLDCIHGYKLGLCPEAASHLQEFKDNLIAISNELIDNVENISSVQIAKLREDRSQLNKQIQQLEKYINSSNLEEERQKSNFATSMAPPTSFVYETPQRNVISSGPNRYDGQAYMGNDTYEPSYQSSYFMPSGPVEREPFIPKIIEVNYIEGSGDKRWSSRDFSWTKELEVNNKRVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALINPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWAEQQDILRELNSDYCKYKLLYVTPEKVARSDVLLRHLESLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLRYSVVPKTKKCLEDIDKFIRANHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPDQRAFVQRQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQSSSCVLYYSYSDYIRVKHMLSLGAIEQSPMPSGYSRSNAINSGRILETNTENLLRMVSYCENDVDCRRHIQLVHFGEKFDSSACQKTCDNCVKVTSFVERDVTEIAKQLVELVKLTGQKVSASHILEVFRGSFSQMVKKHRHETVRLHGAGKHLAKGEASRILHHLVVEDFLAEEVKKSDFYGSVSSVLKVNETKVRNVLFGGQRIILRFPSSVKPSKPGKCDITPAKGSLTSGKLNLPIDIPDQPQTEVDVNLAANLYTALRMLRTALCREAGEGVMAYHIFGNATLQQISKRLPRTKEELLDINGISKTKVSKYGDRLLETIEKTINEYYHTDKNSSGSKGSTDSAKRRREANRDPDSNAEGDDDDDDSLIKSTGRSKKRTVRRQIKKAEIYDSEEEDYYHGCLDEDLDCINIEDEALDKVTGTDAAGRVLPQWTAS 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00066 1159 FunFam ATP-dependent DNA helicase RecQ 378 595 - -
Trre3g00066 1159 Gene3D - 819 929 IPR036388 -
Trre3g00066 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 737 IPR027417 -
Trre3g00066 1159 CDD SF2_C_RecQ 596 728 - -
Trre3g00066 1159 Coils Coil 270 297 - -
Trre3g00066 1159 ProSiteProfiles HRDC domain profile. 972 1054 IPR002121 GO:0003676
Trre3g00066 1159 MobiDBLite consensus disorder prediction 1053 1101 - -
Trre3g00066 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 862 IPR027417 -
Trre3g00066 1159 CDD DEXHc_RecQ 396 595 - -
Trre3g00066 1159 Pfam RQC domain 819 933 IPR018982 GO:0006260|GO:0006281|GO:0043138
Trre3g00066 1159 Gene3D - 596 815 IPR027417 -
Trre3g00066 1159 Pfam HRDC domain 977 1044 IPR002121 GO:0003676
Trre3g00066 1159 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 613 758 IPR001650 -
Trre3g00066 1159 FunFam Bloom syndrome, RecQ helicase 596 816 - -
Trre3g00066 1159 Gene3D - 369 595 IPR027417 -
Trre3g00066 1159 SMART helicmild6 638 719 IPR001650 -
Trre3g00066 1159 NCBIfam RecQ family ATP-dependent DNA helicase 397 872 IPR004589 GO:0004386|GO:0006310
Trre3g00066 1159 Pfam RecQ zinc-binding 730 811 IPR032284 -
Trre3g00066 1159 SMART hrdc7 972 1054 IPR002121 GO:0003676
Trre3g00066 1159 FunFam ATP-dependent DNA helicase Q-like 4A 968 1054 - -
Trre3g00066 1159 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 527 536 IPR002464 -
Trre3g00066 1159 Pfam Helicase conserved C-terminal domain 613 718 IPR001650 -
Trre3g00066 1159 MobiDBLite consensus disorder prediction 1065 1079 - -
Trre3g00066 1159 Gene3D HRDC domain 971 1060 IPR044876 -
Trre3g00066 1159 SMART RQC_2 821 932 IPR018982 GO:0006260|GO:0006281|GO:0043138
Trre3g00066 1159 Pfam DEAD/DEAH box helicase 407 575 IPR011545 GO:0003676|GO:0005524
Trre3g00066 1159 ProSiteProfiles Rhodanese domain profile. 628 670 IPR001763 -
Trre3g00066 1159 SUPERFAMILY HRDC-like 976 1048 IPR010997 GO:0000166|GO:0044237
Trre3g00066 1159 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 413 588 IPR014001 -
Trre3g00066 1159 PANTHER DNA HELICASE RECQ FAMILY MEMBER 375 1063 - -
Trre3g00066 1159 SMART ultradead3 401 604 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00066 Trre-Chr3 468395 475466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00066 628 732 Eukaryotic Initiation Factors Gene Family AT1G72730 24.762 2.17e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00066 K10901 - gmx:100800006 1750.72