Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00056 ATGGGTAACATTTTGATTTTCATATTCTTCTTCATCAATGTCTCCATAGCACCCTCTTATGGATATGATCCGTTGGATCCTTTTGGTAACATCACCATCACATGGGATTTCTTGGCTGATAATGGAGAAACTATCGATGTGAAGGTATCAATATACAATTTCCAACTATTTCGCCACATGGAAGAGCCTGGTTGGAAATTGGGCTGGGCTTGGAGAGGTCATGAAGTGATTATGGCAATGTTAGGAGCAGAGGCAATGGAACAAGGGAATTGTACAAAATTTAGAGGACAAGATAAACCTCATTGTTGTAAGAAAGAGCCAGTTATTATTGATCTCATGCCTGGAGCACCATACAACATGCAATCTGCTAATTGTTGTAAAGGAGGGGTCTTAACATCATTGACACAAGATGTTACCAAACATATTGCATCATTTCAGATGAATTATATGAAATCATCAACCTCAATTTCAGGTACCAATTTTAGTATGCCTGAGAATTTTACACTAGGTGTTCCTGGTTATAGTTGTGGCAAACCATTTGAAGTCCCACCAACCAAATTTACCAAAAATGGACACAGGTGGCTGCAAGTCCTAGAAACTTGGAACGTGACATGTACTTACTCGCCGTTTTTAGCATCACCTACCCCAAAATGTTGTGTCTCCTTCTCTGCATTCTATCATAGTGACATTGTTCCTTGCCCTTTATGCAGCTGTAATTGCCAAGGACAACCAAAAGCAGATTGCATAGATTCTTATAAGACTTCAGTGTTGAAACTTCCACAAGCAAATAGTGCAGAAGAACCAGTTGTGAGGTGTTCACATCACATGTGTCCTATACGAGTTCATTGGCATGTGAAACAAAGTTATAGAGATTATTGGAGGGTCAAGATCACAATCACAAATCTAAACATCATCAAAAACTATTCTCAATGGAATTTGGTGGTGTTACATCCCAACTTGCGAAGTTTAACCCAAGTTTTTAGTTTCAATTACCAACCTTTGCCAACTTATGGAAATTTCAATGATACAGGGATATTTTGGGGCCTAAAATACTACAATGACTTGTTACTAGCACATGGAGAGGATGGAAATGTGCAAACAGAGTTGTTGCTAAACAAAGATCAAGGAGAGTTTACCTTCAAAGAAGGATGGACTTTTCCAAGAAAAATTTCATTTAATGGAGATGAATGTGTTATGCCATCTCCTGACCATTATCCAAGGCTTCCCAACTCTGCTCATATTGCTACCAAAACCACTCACATGCTTTTGTTCTTCATGTTACTATTCACAATATTGTTCTTATAA 1305 0.3824 MGNILIFIFFFINVSIAPSYGYDPLDPFGNITITWDFLADNGETIDVKVSIYNFQLFRHMEEPGWKLGWAWRGHEVIMAMLGAEAMEQGNCTKFRGQDKPHCCKKEPVIIDLMPGAPYNMQSANCCKGGVLTSLTQDVTKHIASFQMNYMKSSTSISGTNFSMPENFTLGVPGYSCGKPFEVPPTKFTKNGHRWLQVLETWNVTCTYSPFLASPTPKCCVSFSAFYHSDIVPCPLCSCNCQGQPKADCIDSYKTSVLKLPQANSAEEPVVRCSHHMCPIRVHWHVKQSYRDYWRVKITITNLNIIKNYSQWNLVVLHPNLRSLTQVFSFNYQPLPTYGNFNDTGIFWGLKYYNDLLLAHGEDGNVQTELLLNKDQGEFTFKEGWTFPRKISFNGDECVMPSPDHYPRLPNSAHIATKTTHMLLFFMLLFTILFL 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00056 434 PIRSF COBRA 1 434 IPR006918 GO:0010215|GO:0016020
Trre3g00056 434 PANTHER PROTEIN COBRA 9 426 IPR006918 GO:0010215|GO:0016020
Trre3g00056 434 Pfam COBRA-like protein 47 208 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00056 Trre-Chr3 428884 430953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00056 6 434 COBRA Gene Family AT3G02210 51.487 5.75e-162 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00056 - - lang:109329241 686.026