Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00055 ATGGGGAAATTCTTGAAACCTAACAAGGCAGTGATTGTCCTTCAAGGCCGTTATGCCGGCAAAAAGGCGGTGATCGTTCGTACCTTCGATGACGGTACCCGTGAGAGGCCATACGGACACTGTCTTGTCGCCGGAATCAAGAAGTACCCTAGCAAGGTGATCAAGAAGGACTCTGCTAAGAAGACGGCGAAGAAATCTAGGGTTAAGGCATTCGTGAAGGTCGTGAACTATCAGCATTTGATGCCAACTCGTTACACTCTCGATGTGGATCTCAAGGATACTGTTGTTCCTGATGTTCTTCAAGCGAAAGACAAGAAGGTTACAGCGCTCAAGGAGACTAAGAAGCGTTTGGAGGAGAGGTTCAAGACTGGCAAGAACAGTCCCTGTTGCTTTTGGTGTGGTTACCTTGTAGGAATTTAG 420 0.4762 MGKFLKPNKAVIVLQGRYAGKKAVIVRTFDDGTRERPYGHCLVAGIKKYPSKVIKKDSAKKTAKKSRVKAFVKVVNYQHLMPTRYTLDVDLKDTVVPDVLQAKDKKVTALKETKKRLEERFKTGKNSPCCFWCGYLVGI 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00055 139 Pfam Ribosomal L27e protein family 52 127 IPR001141 GO:0003735|GO:0005840|GO:0006412
Trre3g00055 139 PANTHER 60S RIBOSOMAL PROTEIN L27 1 127 IPR001141 GO:0003735|GO:0005840|GO:0006412
Trre3g00055 139 SUPERFAMILY Translation proteins SH3-like domain 3 114 IPR008991 -
Trre3g00055 139 SMART kow_9 4 31 IPR005824 -
Trre3g00055 139 Gene3D - 1 133 IPR038655 -
Trre3g00055 139 Coils Coil 100 120 - -
Trre3g00055 139 FunFam 60S ribosomal protein L27 1 133 - -
Trre3g00055 139 CDD KOW_RPL27 6 88 IPR041991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00055 Trre-Chr3 426311 427311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00055 1 126 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 80.159 1.15e-70 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00055 K02901 - gmx:100793982 230.335