Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00054 ATGAAGACACATTCACAAGAGAACTATCATATTTGCCCATACCCGGATTGTGGGAAGAGATACGCTCATGAATACAAGCTAAAGAATCACATTGCTTCTCATCATGAAAAGAGTACACCTACAATGGATGTGACGCCTAAGTATACCACTCCTCCTTCAGAAAAACAAACAAAAACCGCTAAACCTTCTGGGGCAACATACGGTTCAGCATCCTCTGATCGCCCATATGCATGTCCTTATGAAGGGTGTGAAAAAGCATACATTCATGAGTACAAGCTTAAACTGCATTTGAAGAGGGAGCATCCTGGCCACATAAATGATGAAAATGCCTTGCATGCTCTGGCTAATAATGCTGAAAATGAAATGGATGAAGCAAGTGATCATGATGCTTATGGTGGGAAACGTTCCAACGGTAAAAGTCAGAAGCAAAGTAGGCCCAAGCCAAACTTGAAAATGCCTCCTTCCAAAGTTGCACAGCGGAAAGGGTCTACTCCAACTCCTGCCACTTTTAATATGGTTAAAAAACCTTGGCCGGTGAAAGATGAAACATATGATGAAGACAGCGAAGAAACCGAGGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCTGGAAACAACGACGATGATGATGAGGAAACAGAATATGAAGACTGA 660 0.4227 MKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKSTPTMDVTPKYTTPPSEKQTKTAKPSGATYGSASSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHINDENALHALANNAENEMDEASDHDAYGGKRSNGKSQKQSRPKPNLKMPPSKVAQRKGSTPTPATFNMVKKPWPVKDETYDEDSEETEEDRDNVEDGWRYAGNNDDDDEETEYED 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00054 219 ProSitePatterns Zinc finger C2H2 type domain signature. 12 35 IPR013087 -
Trre3g00054 219 Gene3D Classic Zinc Finger 7 39 - -
Trre3g00054 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 106 IPR013087 -
Trre3g00054 219 FunFam Zinc finger transcription factor YY1 51 119 - -
Trre3g00054 219 Coils Coil 108 128 - -
Trre3g00054 219 MobiDBLite consensus disorder prediction 121 135 - -
Trre3g00054 219 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 1 198 - -
Trre3g00054 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 40 IPR013087 -
Trre3g00054 219 SMART c2h2final6 10 34 IPR013087 -
Trre3g00054 219 SMART c2h2final6 76 101 IPR013087 -
Trre3g00054 219 SUPERFAMILY beta-beta-alpha zinc fingers 1 35 IPR036236 -
Trre3g00054 219 MobiDBLite consensus disorder prediction 121 219 - -
Trre3g00054 219 Pfam Zinc finger, C2H2 type 10 34 IPR013087 -
Trre3g00054 219 MobiDBLite consensus disorder prediction 42 70 - -
Trre3g00054 219 SUPERFAMILY beta-beta-alpha zinc fingers 71 99 IPR036236 -
Trre3g00054 219 Gene3D Classic Zinc Finger 49 113 - -
Trre3g00054 219 ProSitePatterns Zinc finger C2H2 type domain signature. 78 101 IPR013087 -
Trre3g00054 219 MobiDBLite consensus disorder prediction 32 73 - -
Trre3g00054 219 FunFam zinc finger transcription factor YY1 7 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00054 Trre-Chr3 418537 419537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00054 1 205 C2H2 Transcription Factor Family AT4G06634 61.468 6.21e-72 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre3g00054 zf-C2H2 0.0044 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00054 - - zju:107412546 340.117