Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00053 ATGGAGACTCACTTCAATCACACTCTCTTCGATAGGCGCCCCTTTCTCAAGTCCAAAGCTCCTGCAGTTAAATGGGTCAAACAATGGGTTCCCCAAGATGTTGTGGCTACTGGTGGGAAGTGCATGCTCTTAAGATGGGTAACAGAGGACACCATAAAGGCCTTGAAAGAGAAGGAGAAAGAACCTTTAGCTCCGGAGCCAGAACCCGAGCCAACTACTGAAGTACTTTTCCTTTGCAGCTACGAAGGCTGTGGAAAGACATTTATAGATGCTGGTGCTTTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATTTGTTTGCCATTACGAGGGGTGTGGAAAGAAATTTCTTGACAGCTCAAAGTTAAAAAGACATTTCCTAATTCACACAGGGGAGAGGGATTTCGTGTGTCCTCATGAAGGCTGTGGTAAGGTGATAAATCTATCCATTGTTCTTGTTTATTGA 468 0.4487 METHFNHTLFDRRPFLKSKAPAVKWVKQWVPQDVVATGGKCMLLRWVTEDTIKALKEKEKEPLAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKVINLSIVLVY 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00053 155 FunFam Putative zinc finger protein 143 103 133 - -
Trre3g00053 155 SUPERFAMILY beta-beta-alpha zinc fingers 78 102 IPR036236 -
Trre3g00053 155 Gene3D Classic Zinc Finger 103 135 - -
Trre3g00053 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Trre3g00053 155 SMART c2h2final6 77 101 IPR013087 -
Trre3g00053 155 SMART c2h2final6 106 130 IPR013087 -
Trre3g00053 155 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Trre3g00053 155 Pfam Zinc finger, C2H2 type 106 130 IPR013087 -
Trre3g00053 155 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
Trre3g00053 155 FunFam zinc finger transcription factor YY1 77 102 - -
Trre3g00053 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Trre3g00053 155 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 145 - -
Trre3g00053 155 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Trre3g00053 155 SUPERFAMILY beta-beta-alpha zinc fingers 95 143 IPR036236 -
Trre3g00053 155 Gene3D Classic Zinc Finger 77 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00053 Trre-Chr3 410699 412451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00053 10 155 C2H2 Transcription Factor Family AT4G06634 69.863 8.03e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre3g00053 zf-C2H2 0.0088 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00053 - - mcha:111019807 270.781