Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00052 ATGGAACTGTCATCAGATTTGCAACAAAACAACAACAACAAGCAGAAAAGAGGCACCACCACTCATCCCCATCCCCACCACCAACAACAAGAATCATCTTCTCCACCTTCAAATTCTCATTCACAGCAACACCATCTTGTGGTCCCTTTTGATGGAAGACCATCATCTTTCCTTATGGGCTCCATCTCCAACAACAACTCTTCCTCTCCATCCAATTCTTCTTCTTCCTCTGCTTCAGCTTCTGCAATTGACGCTTCTCTTGCTATTGCTACCAGATCTGAACCACCTTCACTTCCTCATTCCACCAATAACAATAATAACCAAATTCAACAATTCTCTTCTTCCACCACCACCGCCGTCGCTGCTGCTAATCCTCCTAAACGATCCACCAAGGACAGACACACCAAAGTTGACGGACGTGGTAGGAGAATTCGAATGCCGGCCACATGTGCTGCAAGAGTTTTCCAGTTGACCAGAGAATTAGGCCACAAATCCGACGGTGAAACAATTGAGTGGCTTCTTCAACAAGCGGAGCCGGCTATAATCGCTGCCACGGGAACCGGAACAATTCCCGCGAATTTCTCAACGCTCAACGTCTCACTCAGAAGCAGCGGCTCAACGCTGATGGCGCCGCCTTCGAAATCAGCTCCTCACAGTTTTCACAACACGCTTGCACTGGCTCATCATCCTTATGAAGAAGCTGCGTACCAACACGCGCCACTGTTAGGGTTTCATCCTCATCAACACCAGCAACAGCTCATGAACGCCGATCAAATCGGCGAAGCGCTTTCAAATGAGAATTATATGAGAAAACGCTATAGAGAAGATCTTTTCAAAGACGATAACAACCAAAACGAGAGTGGTGAAGGTGATGGTTCTTCTCCCAAAAGTTTCAAAACAAACCACCAACCAGATGGAATAGGAGGAGAAGGTGAAGGTGGAGGAGGAGCTTCTTCATCCGCTTCTTCTGCTGGAAATTCTATTTCTGGACTTCTTCGACAACCACCACCGTCAAATATGTTACCGGCAACAGCCATGTGGGCCACGGCGGGGAGTGGAAACACAATATGGATGGTACCGGTGAGTGGCGGCGGCGGAAACGCGAATACAAATTCAGAGACACAGACACAAAACATGTGGCCTTTTAGTCCTCATCATCATAATCAACAACAAGGAACACCGTCGTCTCAGTTGCATTTCATGCCGAGGTTCAATGTTCCAGCAGGTTCAGGTGTTGAATTTGAAGGTGGACGTGGTGCAGCAGCAGCAGTAGGTGGTTTACAATTGGGTTCTTCTGTTTATCATCAACCAGCAGCAGCAGCAGCACCGTCGCAGCATATTGGATTGGCAGTGTCTGATTCAAATTTGGGTATGTTGGCTGCTCTTAATGCTTATACAAGAGCTGCTGCTGTCGTCATGATGAGAGTGGATCGGAAGATGCTCCTAATAACAATAATACCTCACAATGACTTCTACAAACAATTCATGATTGCAAGTTGA 1500 0.4693 MELSSDLQQNNNNKQKRGTTTHPHPHHQQQESSSPPSNSHSQQHHLVVPFDGRPSSFLMGSISNNNSSSPSNSSSSSASASAIDASLAIATRSEPPSLPHSTNNNNNQIQQFSSSTTTAVAAANPPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLMAPPSKSAPHSFHNTLALAHHPYEEAAYQHAPLLGFHPHQHQQQLMNADQIGEALSNENYMRKRYREDLFKDDNNQNESGEGDGSSPKSFKTNHQPDGIGGEGEGGGGASSSASSAGNSISGLLRQPPPSNMLPATAMWATAGSGNTIWMVPVSGGGGNANTNSETQTQNMWPFSPHHHNQQQGTPSSQLHFMPRFNVPAGSGVEFEGGRGAAAAVGGLQLGSSVYHQPAAAAAPSQHIGLAVSDSNLGMLAALNAYTRAAAVVMMRVDRKMLLITIIPHNDFYKQFMIAS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00052 499 MobiDBLite consensus disorder prediction 93 141 - -
Trre3g00052 499 Pfam TCP family transcription factor 129 276 IPR017887 -
Trre3g00052 499 MobiDBLite consensus disorder prediction 57 78 - -
Trre3g00052 499 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 44 459 IPR005333 GO:0003700
Trre3g00052 499 MobiDBLite consensus disorder prediction 95 124 - -
Trre3g00052 499 MobiDBLite consensus disorder prediction 1 78 - -
Trre3g00052 499 ProSiteProfiles TCP domain profile. 130 184 IPR017887 -
Trre3g00052 499 MobiDBLite consensus disorder prediction 278 337 - -
Trre3g00052 499 MobiDBLite consensus disorder prediction 316 334 - -
Trre3g00052 499 MobiDBLite consensus disorder prediction 25 45 - -
Trre3g00052 499 MobiDBLite consensus disorder prediction 1 18 - -
Trre3g00052 499 MobiDBLite consensus disorder prediction 127 141 - -
Trre3g00052 499 MobiDBLite consensus disorder prediction 287 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00052 Trre-Chr3 405986 407738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00052 127 387 TCP Transcription Factor Family AT1G35560 48.315 3.92e-61 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre3g00052 TCP 8.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00052 - - adu:107482753 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00052 3 405986 407738 Trre3g00052 3 405986 407738 ECH