Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00033 ATGATCCCTTTTACCTTAATTGTTTTTACTCTGTTTTCCTCTGTTTTTGCTTCATCCTTGTTCAGTGATTTTCATGCTCTAGTCACACTTAGAGAAGGTTTTCAATACCCAAACCCAGTTATAAACACATGGAACACTTCCAATTTCACCTCAGTTTGTTCATGGGTTGGAATTCAATGCCATGAGGGTCGAGTCGTCTTGATAGACTTAACAGATTTGAATCTGTTTGGCTCTGTTTCACCTTCAATTTCATCACTTGATAAACTCACACACCTTTCCCTTGCAGGCAACAACTTCACAGGAACCATTCACATAACAAACTTAACCAGCCTTCAATTTCTAAACATTTCCAATAACCAGTTCAGTGGTCACATGGATTGGAACTACTCCACCATGGAAAACCTTCAAGTTGTTGATGTCTATAACAATAACTTCACTTCCTTGCTTCCATTGGGACTTGTTAGTTTGAAGAAAAGCCTCAAATACTTGGATCTTGGTGGTAACTTTTTCTACGGCGAAATACCGAAAAGCTATGGAAAATTTGTGTCTCTTGAGTATTTGTCAGTAGCTGGAAATGATATTACTGGGAAAATACCTGGTGAGTTGGGGAATCTTAGTAACTTGAGAGAGATTTACTTGGGCTATTACAATTCTTATGAAGGTGGAATTCCAAAGGAGTTTGGAAAGCTAACAAATTTGGTTCACATGGATCTTTCAAGCTGTGACTTAGATGGTTCAATACCAAGAGAGTTAGGTAACTTGAAAGAGCTCAACACACTTTATTTGCATATAAATCAGCTTTCAGGTTCAATACCAAAACAACTTGGTAACTTGACAAACTTGCTCTACCTTGACCTTTCAAGCAATGCACTCACAGGTGAAATCCCTTATGAGTTCATCAACCTTAACCGTCTCAAGCTTTTCAATCTTTTCTTGAACAGGTTACATGGTTCTATACCTGACTACATTGCAGATTTTCCTGATTTAGACACACTTGGACTTTGGATGAACAACTTTACAGGTGAAATTCCACACAAACTTGGTCTTAATGGAAAGCTTCAAGGACTTGACTTGTCCTCTAATAAACTCACTGGTGTCATTCCACCTCATCTTTGTTCCTCAAACCAGCTTAAGATTTTGATTCTTCTCAATAATTTTCTCTTTGGTCCCATACCTGAAGGCCTAGGAACATGTTACAGTCTCACTAGAGTGAGGTTAGGAGAGAATTATCTTAATGGTAGCATACCAAATGGTTTTCTTTACCTTCCTAAGCTAAATTTAGCAGAGTTGAAAAATAATTACTTGTCAGGAGAATTGTCAGAAAATGGTAATAGTTCCTCTATGCCTGTTTGTTTAGAACAACTTGATTTGTCAAACAATGCCTTGTCTGGTCCTTTACCACATTCCCTCTCAAATTTCACTTCCCTTCAAATCCTTTTGCTTAGTGGAAACCAATTCTCAGGTCCAATTCCAAGTTCAATTGGAGGACTAAATCAAGCGCTCAAGCTCGACCTTAGCAGAAACTCGTTATCCGGTGAAATTCCACCCGAAATTGGATTTTGTGTTCATCTTACATACCTTGACATGAGCCAGAACAATCTCTCTGGCTCCATCACACCATTGATTTCCAACGTCCGTCTTTTGAATTACTTGAACTTGTCTAGAAACCATTTAAACCAAACCATCCCAAGATCAATAGGGACAATGAAAAGCCTCACAGTTGCTGATTTCTCATTCAACGAATTCTCCGGTAAATTGCCTGAGTCAGGTCAATTTGCATTCTTTAACGCTTCTTCGTTCGCGGGAAATCCTAAACTATGTGGTTCTCTATTGAACAATCCATGTAAGATGACAAGAATGAAATCCACACCAGAAAAAAGTTCCGCAGATTTCAAGCTGATATTCGCGCTAGGACTATTGATGTGTTCGTTAGTGTTTGCAATTGCAGCCATTATAAAAGCCAAGTCATTCAAAAAGAAAGGACCTGGTTCTTGGAAAATGACTGCTTTTCAAAAGCTCGAATTCACAGTTTCGGACATCCTCGAATGCGTTAAAGATGGGAATGTGATTGGAAGAGGAGGTGCAGGGATTGTTTACCATGGAAAAATGCCAAATGGGATGGAAATAGCAGTTAAAAAGTTACTTGGATTTGGTGCAAATAGCCATGATCATGGTTTTCGAGCTGAAATTCAAACACTTGGAAACATAAGGCACAGAAACATAGTGAGGTTACTTGCATTCTGTTCAAACAAAGAAACAAATTTGCTTGTGTATGAATACATGAAAAATGGGAGCTTAGGTGAGGCATTGCATGGGAAAAAAGGTGGATTCTTGAGTTGGAATTTTAGGTACAAAATATCTATTGAGTCTGCTAAAGGACTCTGCTACCTTCACCATGATTGTTCTCCTTTGATCCTACATAGAGATGTGAAATCCAATAACATTTTGTTGAGTTCAAATTTTGAAGCACATGTGGCTGATTTTGGTCTTGCAAAGTTCTTGGTTGATGGTGCTGCATCCGAGTGCATGTCTTCAATTGCAGGCTCATATGGCTACATTGCACCTGAATATGCTTATACATTGAGAGTGGATGAAAAGAGTGATGTTTATAGTTTTGGAGTTGTTCTACTAGAGCTTCTAACAGGAAAGAAACCAGTAGGTGATTTTGGAGAAGGTGTGGATCTTGTACAATGGTGCAAAAAAGCAACCAATGGAAGAAGAGAAGAGGTTGTGAACATAGTTGATTCAAGACTCATGGTGGTGCCAACAGAAGAAGCCATGCACATGTTCTTCATTGCCATGTTATGCTTAGAAGAAAATAGTGTACAAAGACCAACAATGAGAGAAGTTGTTCAGATGCTTTCTGAATTTCCTAGATCAATGTCATCTAATCAACAATCTTCTTCTTCTTCTAGTCATCCACCAACCAAAAAGTTAATTCAGAATGATAAATTACCTTGTCCTCCTACTTTTAAACAAGACCTTTTGGTTTAA 2994 0.3831 MIPFTLIVFTLFSSVFASSLFSDFHALVTLREGFQYPNPVINTWNTSNFTSVCSWVGIQCHEGRVVLIDLTDLNLFGSVSPSISSLDKLTHLSLAGNNFTGTIHITNLTSLQFLNISNNQFSGHMDWNYSTMENLQVVDVYNNNFTSLLPLGLVSLKKSLKYLDLGGNFFYGEIPKSYGKFVSLEYLSVAGNDITGKIPGELGNLSNLREIYLGYYNSYEGGIPKEFGKLTNLVHMDLSSCDLDGSIPRELGNLKELNTLYLHINQLSGSIPKQLGNLTNLLYLDLSSNALTGEIPYEFINLNRLKLFNLFLNRLHGSIPDYIADFPDLDTLGLWMNNFTGEIPHKLGLNGKLQGLDLSSNKLTGVIPPHLCSSNQLKILILLNNFLFGPIPEGLGTCYSLTRVRLGENYLNGSIPNGFLYLPKLNLAELKNNYLSGELSENGNSSSMPVCLEQLDLSNNALSGPLPHSLSNFTSLQILLLSGNQFSGPIPSSIGGLNQALKLDLSRNSLSGEIPPEIGFCVHLTYLDMSQNNLSGSITPLISNVRLLNYLNLSRNHLNQTIPRSIGTMKSLTVADFSFNEFSGKLPESGQFAFFNASSFAGNPKLCGSLLNNPCKMTRMKSTPEKSSADFKLIFALGLLMCSLVFAIAAIIKAKSFKKKGPGSWKMTAFQKLEFTVSDILECVKDGNVIGRGGAGIVYHGKMPNGMEIAVKKLLGFGANSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMKNGSLGEALHGKKGGFLSWNFRYKISIESAKGLCYLHHDCSPLILHRDVKSNNILLSSNFEAHVADFGLAKFLVDGAASECMSSIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGKKPVGDFGEGVDLVQWCKKATNGRREEVVNIVDSRLMVVPTEEAMHMFFIAMLCLEENSVQRPTMREVVQMLSEFPRSMSSNQQSSSSSSHPPTKKLIQNDKLPCPPTFKQDLLV 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00033 997 Gene3D Ribonuclease Inhibitor 217 266 IPR032675 -
Trre3g00033 997 SMART serkin_6 684 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00033 997 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 217 955 - -
Trre3g00033 997 Gene3D Transferase(Phosphotransferase) domain 1 761 979 - -
Trre3g00033 997 SUPERFAMILY L domain-like 20 215 - -
Trre3g00033 997 SMART LRR_typ_2 351 374 IPR003591 -
Trre3g00033 997 SMART LRR_typ_2 545 569 IPR003591 -
Trre3g00033 997 SMART LRR_typ_2 132 155 IPR003591 -
Trre3g00033 997 SMART LRR_typ_2 473 497 IPR003591 -
Trre3g00033 997 SMART LRR_typ_2 278 302 IPR003591 -
Trre3g00033 997 SMART LRR_typ_2 230 254 IPR003591 -
Trre3g00033 997 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Trre3g00033 997 ProSiteProfiles Protein kinase domain profile. 684 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00033 997 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 218 323 - -
Trre3g00033 997 MobiDBLite consensus disorder prediction 959 978 - -
Trre3g00033 997 SUPERFAMILY Protein kinase-like (PK-like) 675 954 IPR011009 -
Trre3g00033 997 SUPERFAMILY L domain-like 351 608 - -
Trre3g00033 997 Pfam Leucine Rich repeat 278 294 IPR001611 GO:0005515
Trre3g00033 997 Pfam Leucine Rich repeat 521 536 IPR001611 GO:0005515
Trre3g00033 997 Gene3D Ribonuclease Inhibitor 22 130 IPR032675 -
Trre3g00033 997 Gene3D Ribonuclease Inhibitor 267 324 IPR032675 -
Trre3g00033 997 Gene3D Phosphorylase Kinase; domain 1 649 760 - -
Trre3g00033 997 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 761 971 - -
Trre3g00033 997 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 653 760 - -
Trre3g00033 997 Pfam Protein tyrosine and serine/threonine kinase 687 954 IPR001245 GO:0004672|GO:0006468
Trre3g00033 997 MobiDBLite consensus disorder prediction 959 997 - -
Trre3g00033 997 Pfam Leucine rich repeat N-terminal domain 22 60 IPR013210 -
Trre3g00033 997 Gene3D Ribonuclease Inhibitor 325 623 IPR032675 -
Trre3g00033 997 SUPERFAMILY L domain-like 159 435 - -
Trre3g00033 997 Gene3D Ribonuclease Inhibitor 131 216 IPR032675 -
Trre3g00033 997 FunFam Leucine-rich repeat receptor-like kinase 22 127 - -
Trre3g00033 997 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 129 217 - -
Trre3g00033 997 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 330 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00033 Trre-Chr3 280820 285500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00033 17 989 Receptor kinase-like Gene Family AT5G65700 56.421 0.0 1080
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre3g00033 PK_Tyr_Ser-Thr 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00033 - - tcc:18607145 1493.4