Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00029 ATGGAGAAAACGGGTGATGAGTCTCCCAAGAATAAAGTAAAATTCCTTTGCAGTTATGGCGGAAAGGTTCTTCCAAGACCCTCCGATGGGGTCCTTAAGTATGTCGGTGGCGAGACTCGCATCATATGTATCCCTCGCGACGTCACTTTCTCCGAGATGATGAAGAAGGTGAGCGGCATGGTTGATGGAGAGGTGGTGTTCAAGTACCAGGTGATCCCTGAAGAACTTGATGCATTGGTAACGGTTAAAACAGATGAGGATCTGAAGCACATGATTGAGGAACACGATCGCCATGGGACCGGTGGATCCCCATTGCTTCGTGCATTTCTATTCCCTTCAAAGCCGCTTTTGGTTGACACACAGGTTCAAATGCAAGGGCAACCGGTAGCACCACATCCAGTACTATCTGTTGAACCATATTGGTTAGAGCAACGTTACATTGATGCCATCAATGGAATAGCCCGGCGGACAAGCCCCAGATCTAAGTTTGCGCCGCGCTCTGCATGTTCTTCGCCAAAATCAACCTCCCCAGATGGACATACTGACGTCGAATCGCCCTTCCACCCCAGTTTGCAGCAGTTACAGCAGGGTAAGGTTACAATGCAAAGAGTGAGAAGCTCTCCAAGTCTATCAAACCTAACAAGCACCAGCAGCAACAATTCACAATCATCACTGCAGCCACTTGATCATGGTGTTTGTAGTAGTAATCATTCTTCCTTACAAAAAAGTAGTAGTTGTCATCATTATCACCATCACCACCAGCACCCTCTTGTTGGATTTAGACCCATACAAGAACAAGGGATGGGAAGGTCATCTCCATTGAATATGAATATGATGATGGATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATTTGAGTAGGAATACTAGCAGTAGTAGTAGGGGTGTTAATTACTATTACTCCACTGCAAGCAGACCCCATAAAGCGTATGCATACCATGATGACTCTGCCCCCGGTGGTCATATTAAGGTTGAAAGAGTTCACTCCGTCCCCCGAAGTCCCAAAATGTCTATATGGGAATGA 1059 0.4448 MEKTGDESPKNKVKFLCSYGGKVLPRPSDGVLKYVGGETRIICIPRDVTFSEMMKKVSGMVDGEVVFKYQVIPEELDALVTVKTDEDLKHMIEEHDRHGTGGSPLLRAFLFPSKPLLVDTQVQMQGQPVAPHPVLSVEPYWLEQRYIDAINGIARRTSPRSKFAPRSACSSPKSTSPDGHTDVESPFHPSLQQLQQGKVTMQRVRSSPSLSNLTSTSSNNSQSSLQPLDHGVCSSNHSSLQKSSSCHHYHHHHQHPLVGFRPIQEQGMGRSSPLNMNMMMDNNNNNNNNNNNNNNNLSRNTSSSSRGVNYYYSTASRPHKAYAYHDDSAPGGHIKVERVHSVPRSPKMSIWE 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00029 352 Coils Coil 280 300 - -
Trre3g00029 352 Gene3D - 33 111 - -
Trre3g00029 352 SUPERFAMILY CAD & PB1 domains 28 115 - -
Trre3g00029 352 PANTHER OS05G0427100 PROTEIN-RELATED 5 316 - -
Trre3g00029 352 MobiDBLite consensus disorder prediction 281 308 - -
Trre3g00029 352 MobiDBLite consensus disorder prediction 158 250 - -
Trre3g00029 352 MobiDBLite consensus disorder prediction 163 243 - -
Trre3g00029 352 CDD PB1_UP2 16 111 - -
Trre3g00029 352 SMART PB1_new 27 113 IPR000270 GO:0005515
Trre3g00029 352 Pfam PB1 domain 32 112 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00029 Trre-Chr3 236846 238008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00029 12 160 MAP Kinase Kinase Kinase AT5G57610 44.667 1.08e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00029 - - tpra:123910761 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00029 3 236846 238008 Trre3g00029 3 236846 238008 ECH