Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00027 ATGGCTTCTGCTAGCCTTGGAAATGGTGGTGTCGGCAGTAGTTCCAGGTCTGCTGCCTTAAGAGGTTCATCCAGTTCTGTTGATTGGCTTGGGAGAGAGATGCTTCAGATGAGACTCAGAGACAAACTCGACCATGATGACCATGACGACGATGATGATGATGGCAGAGAGAGTGAGCCTGATATCATTGATGGTGTGGGTGCTGAAACAGGACATGTAATAAGAACCAGTATCGGTGGTGGACGAAACGGTCAATCTAAGCAGAATGTTAGTTATATCGCTGAACATGTAGTTGGGACCGGCTCTTTTGGCACTGTTTTTCAAGCAAAATGTAGAGAAACAGGAGAGATTGTTGCCATCAAGAAGGTTCTCCAGGACAAGCGTTACAAGAATAGAGAGTTACAAATTATGCAAATGCTTGACCATCCAAATATTGTTGCCCTCAGGCATTGTTTCTTTTCTACGACTGACAAAGAAGAGCTTTACTTGAATCTTGTACTTGAATATGTTCCTGAAACGGTGAATCGTGTTGCCAGAAACTATAGCAGGATTAATCAGCGAATGCCTTTAATATACGTGAAACTTTATACATACCAGATATGCAGAGCACTTGCTTATATACATAATTGCATTGGCATCTGTCACCGCGACATCAAACCTCAGAACCTACTTGTGAACCCACACACCCATCAGCTGAAGCTATGTGATTTTGGTAGTGCAAAAGTGTTGGTGAAAGGAGAACCTAATGTTTCATATATCTGTTCAAGATACTATCGTGCCCCAGAACTTATATTTGGTGCGACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGCGTAATGGCTGAATTACTTCTTGGACAGCCCTTGTTTCCTGGGGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAGGTTTTGGGAACTCCTACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACCGAATTTAAGTTTCCGCAGATAAAACCTCATCCATGGCACAAGGTCTTTCAGAAACGTTTACCTCCAGAAGCAGTTGATCTTGTCTGTAGGTTCTTTCAGTACTCTCCTAATTTGAGATGCACTGCTTTGGAAGCTTGCATTCACCCCTTCTTTGATGAATTGAGGGACCCAAGCACCCGCCTTCCCAATGGTCGCCCACTGCCTCCGCTGTTTAATTTTAAACCTCAGGAACTTTCTGGTATTCCACCCGATGTCATCAACCGGCTTATTCCAGAACATGCTCGTAAACAGAACCTATTTATGGCTTTGCATGCCTAG 1293 0.4331 MASASLGNGGVGSSSRSAALRGSSSSVDWLGREMLQMRLRDKLDHDDHDDDDDDGRESEPDIIDGVGAETGHVIRTSIGGGRNGQSKQNVSYIAEHVVGTGSFGTVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEELYLNLVLEYVPETVNRVARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPSTRLPNGRPLPPLFNFKPQELSGIPPDVINRLIPEHARKQNLFMALHA 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00027 430 Gene3D Transferase(Phosphotransferase) domain 1 172 420 - -
Trre3g00027 430 FunFam Glycogen synthase kinase-3 beta 76 171 - -
Trre3g00027 430 ProSitePatterns Protein kinases ATP-binding region signature. 98 122 IPR017441 GO:0005524
Trre3g00027 430 CDD STKc_GSK3 87 379 IPR039192 -
Trre3g00027 430 Pfam Protein kinase domain 94 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00027 430 FunFam Shaggy-related protein kinase kappa 172 420 - -
Trre3g00027 430 SUPERFAMILY Protein kinase-like (PK-like) 91 403 IPR011009 -
Trre3g00027 430 ProSiteProfiles Protein kinase domain profile. 92 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00027 430 MobiDBLite consensus disorder prediction 1 24 - -
Trre3g00027 430 Gene3D Phosphorylase Kinase; domain 1 78 171 - -
Trre3g00027 430 SMART serkin_6 92 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00027 430 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 58 422 - -
Trre3g00027 430 MobiDBLite consensus disorder prediction 41 66 - -
Trre3g00027 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Trre3g00027 430 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00027 Trre-Chr3 225135 230340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00027 98 384 Core Cell Cycle Gene Families AT1G76540 35.254 1.34e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Trre3g00027 Pkinase 1.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00027 K03083 - gmx:100799387 779.63