Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00018 ATGGGTTGTATATGCTCCAAAGGCGGCAAATCTACAAATGAATATGTTGCCCGAAACCACCCAACACAACTCAATCCAAACAAATCATCAAAGCATTTGGCTATCGATACTAATGATTCCACTACGCGCCTCATATCCAACACTTATCGCAATTCCTCCGATGAAGGAGACAAAAAAAATGTTGTTGGAATAGGAGGAGGATCACAAGTAGAAAAAGATGATGATGAAGAACAAGAAGAAGATAGCAAGAGGATAAGTAGATGTTTGAGTTATGGGGAAAGGGGATCCCTTATTGTTGTTGGTTGGCCTTCTTGGCTCACTTCTGTTGCCCCTGAAGCCATAGCTGGTTGGATACCCCGCAGACCTGACTCTTTTCACAAATTGGACAAGATTGGTCAAGGAACTTACAGCAGTGTTTACAGAGCTCGCGATCTTGAAACTAACAAAATCGTTGCTTTGAAGAAGGTTAAATTTGCTAATATGGATCCAGAAAGTGTTCGTTTTATGGCCAGAGAAATCATTCTCCTAAGAAGGCTTGATCATCCAAATGTCATGAAACTTGAAGGAATGATCACTTCAAAGCTTTCCGGTAGCTTGTACCTTATTTTCGAATATATGGACCATGATCTTACTGGTCTTTCAACAATGCCTGGCAACAAGTTTACTCAACCACAGATCAAGTGTTATATGCAACAACTTCTTCGTGGTCTTGAGCATTGTCACAGTCGTGGTGTTATGCATCGTGACATCAAGGGCTCAAATCTTCTACTTGACAATAATGGCAATCTGAAGATTGCTGATTTTGGGCTTGCAACTCATTTTCAACCATCTCAAGGGCAGCCTTTAACAAGTCGTGTAGTTACCTTGTGGTACCGGCCACCTGAACTTTTGCTTGGTGCTACAGATTATGGAGTTGCTGTGGATTTGTGGAGTGCTGGTTGTATTCTTGCAGAACTACTTACCGGGAAGCCTATAATGCCTGGACGAACTGAGGTGGAGCAACTACATAAAATCTTCAAGCTTTGTGGATCTCCTTCTGAAGAATACTGGAAGAAGTCAAAGCTACCACATGCGACAATTTTTAAACCTCAACAACCTTACAAACGTGTTGTTTCTGAGACATTCAAGGATTTTCCTTCATCAGCATTGAGCCTCTTGGAGGTCTTACTTGCTATTGAACCAAACCATCGAGGAACTGCATCTTCGGCACTTCAGAATGAGTTCTTCACATCAATGCCACTTCCTTGTGATCCATCAACTTTGCCAAAGTACCCACCGAGTAAGGAGTTTGGTGCCAGACTTCGAGAAGAGGAAGCTAGAAGACGACGGACAGCAAATAAAGGACATGGAAGACAGGAATCAGTTGGAAGGAATTTTAAAGAGTCTAAAGTTGTGCCAGAACCTGATGCTAATGTTAAGATTCAGGCATCAATAGAGCAGAAGAGACAAGGGCAGTGTATTTCAAAATGCATTAGTGAGAAGTACAATCATGAAGAGGAAGGAGGTTGCTTGCCTCTTGAACCTGCAAAGTCAAGAGCACATAATATCTTCTCTCATTCGGGCCAGTCAATGCATCCAAGTGCACATGGATCGTCACGCAACATGAATTCGAAAGAGGAAGTTGTTCTTACTGGCCCTGATCGTGTGTTTACATCAAGAAACTCTGAATTGAGAAAACAAAATTCCTACTGGCATGGTAGGACTGCACAATTATCAAGATTTTCTAATTCAGTTGCAGTTCGAGGTGATTCACGGCTTGATATGGGTGGGGACCGTGATTTGAATTCACAGTGGCTAGAGGATGACTTTGATATGAGATCTAGTCACTTGCCAGATTGTGAGTCCAATCGATTGCTGGATGGAACGAAACATTCACGCAAGAAAGACTTCCATCTACTCGGAAAGGATCGTGCCATGGGTCATGCTCCTAAGAATTGCCACATCAACTATTCTGGACCACTATTGCCCCCAGAGGATGATCTTGAAGAGATCCTTAAGGAGCATGAAAGACAAATCCAACAAGCTGTGCGCAAAGCTCGTCTAGCTAAGGAAAATAAAAAGGCTGACATTGAGAATGGCCAAACTGAGTCACTATTTCACCAAGTGAGAAGTGGCAAGTGA 2121 0.4253 MGCICSKGGKSTNEYVARNHPTQLNPNKSSKHLAIDTNDSTTRLISNTYRNSSDEGDKKNVVGIGGGSQVEKDDDEEQEEDSKRISRCLSYGERGSLIVVGWPSWLTSVAPEAIAGWIPRRPDSFHKLDKIGQGTYSSVYRARDLETNKIVALKKVKFANMDPESVRFMAREIILLRRLDHPNVMKLEGMITSKLSGSLYLIFEYMDHDLTGLSTMPGNKFTQPQIKCYMQQLLRGLEHCHSRGVMHRDIKGSNLLLDNNGNLKIADFGLATHFQPSQGQPLTSRVVTLWYRPPELLLGATDYGVAVDLWSAGCILAELLTGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYKRVVSETFKDFPSSALSLLEVLLAIEPNHRGTASSALQNEFFTSMPLPCDPSTLPKYPPSKEFGARLREEEARRRRTANKGHGRQESVGRNFKESKVVPEPDANVKIQASIEQKRQGQCISKCISEKYNHEEEGGCLPLEPAKSRAHNIFSHSGQSMHPSAHGSSRNMNSKEEVVLTGPDRVFTSRNSELRKQNSYWHGRTAQLSRFSNSVAVRGDSRLDMGGDRDLNSQWLEDDFDMRSSHLPDCESNRLLDGTKHSRKKDFHLLGKDRAMGHAPKNCHINYSGPLLPPEDDLEEILKEHERQIQQAVRKARLAKENKKADIENGQTESLFHQVRSGK 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00018 706 Gene3D Phosphorylase Kinase; domain 1 112 207 - -
Trre3g00018 706 MobiDBLite consensus disorder prediction 435 460 - -
Trre3g00018 706 SUPERFAMILY Protein kinase-like (PK-like) 119 417 IPR011009 -
Trre3g00018 706 Coils Coil 658 685 - -
Trre3g00018 706 Pfam Protein kinase domain 125 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00018 706 ProSiteProfiles Protein kinase domain profile. 125 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00018 706 SMART serkin_6 125 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00018 706 CDD STKc_CDK9_like 125 409 - -
Trre3g00018 706 FunFam probable serine/threonine-protein kinase At1g54610 208 449 - -
Trre3g00018 706 MobiDBLite consensus disorder prediction 19 83 - -
Trre3g00018 706 MobiDBLite consensus disorder prediction 682 706 - -
Trre3g00018 706 ProSitePatterns Protein kinases ATP-binding region signature. 131 154 IPR017441 GO:0005524
Trre3g00018 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Trre3g00018 706 PANTHER CELL DIVISION PROTEIN KINASE 123 415 - -
Trre3g00018 706 Gene3D Transferase(Phosphotransferase) domain 1 208 449 - -
Trre3g00018 706 MobiDBLite consensus disorder prediction 19 51 - -
Trre3g00018 706 FunFam probable serine/threonine-protein kinase At1g54610 112 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00018 Trre-Chr3 193188 197155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00018 117 447 Core Cell Cycle Gene Families AT5G10270 51.734 9.15e-117 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre3g00018 Pkinase 3.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00018 - - cam:101495256 1036.17