Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00016 ATGGAGTGGGTGGCGGAAACAGAGGAAAGAATTGAGATAGGCAGTGACGGTCACGACGATGATGACTACACAATAAATCAGAAACAACCGTTACTGTTGAGAAAAAGAATCAATAATTCTTCTCAACAGGCTATCGTTGGAGCCAATATATGTCCCATTCAAAGTCTTGATTACGAGTTAATTGAGAATGATCTGTTGAAGCAGGACTGGAGGTCAAGAACCAAGGTTGAGATATACCAATATGTTGTTCTGAAATGGACCCTTGCACTTCTTATTGGCTTAATCACAGGATTTGTTGGGTTTTTTAACAACCTTGGAGTTGAGAATATTGCTGGTTTCAAAATTTTACTCACCAACAATCTCATGCTCAAGCAAAAGTATCATGAGGCATTTGCATTGTACGTCGGTTGTAACATGATTTTAGGGGTTGCGGCTGCAGCCCTGTGTGCTTACATTGCCCCTGCAGCAGCAGGTTCCGGCATACCAGAGGTAAAGGCATACCTCAATGGCATTGATGCACATTCAATATTGGCTCCGTCTACCCTCTTTGTCAAGATACTTGGTTCAATTTTAGGAGTTGCTGCTGGTTTCATTGTGGGGAAAGAAGGACCCATGGTACATACAGGTGCTTGCATTGCTAATTTACTCGGACAAGGCGGTTCTCGTAAATATCGACTCACCTGGAAATGGCTCAGATACTTCAAAAATGATAGAGATCGAAGGGATTTGATCACTTGCGGTGCAGCTGCAGGTGTTGCCGCTGCCTTCCGTGCTCCCGTTGGTGGTGTTCTTTTCGCACTCGAAGAAGCTGCTTCGTGGTGGAGGAGTGCTCTTCTATGGCGTACATTCTTTACCACCGCTGTAGTAGCAGTTGTTTTGAGGAGTCTTATACAATTTTGTCATCAAGGAGGAGGCAAATGCGGTCTCTTTGGCCAAGGAGGACTCATAATGTTTGATGTTAATTCCGCAACGCCTTCCTACACCACAGTCGATCTCCTCGCAGTTATATTTCTCGGAGTCATTGGAGGTCTTATGGGAAGCCTTTACAATTATCTTGTTGATAAAGTCCTTCGCACTTACACCACTATAAATGAGAGAGGTCCAATATTCAAGATTTTACTGGTGATGATTATCTCGTTTGTGACGTCTTGTATTCGATTTGGGCTTCCATTGCTATCAAAGTGTGTGCCATGTCCAGGGGAGTGCCCTAGCCCTCCAACCGCAAGTTTCTCAATACACTATGACAATTTTCAATGTCCACCCAACCACTACAATGATCTCAGCTCTCTCTTTTTCACTACCAACGACAATGCCATCCGCAACCTATTCAATGATAGCTCCAAATCTACCAACGCCGGATTTCAGCTTTTAACTCTCATAATTTTCTTCGTGGCAATATACCTGCTTGGAATTGTGACATACGGTGTTGCCATTCCCTCTGGTCTATTCATTCCGGTCATACTTGCTGGAGCTTCCTATGGGCGTCTAATAGGGACTGTGTTGGCTCAATTCACAGTTCTTGATACTGGTTTGTTTGCTCTCCTTGGAGCAGCATCCTTCCTTGGTGGAACCATGAGAATGACGGTTTCTCTCTGTGTCATACTTCTTGAGCTCACGGATAACTTGTTGATGCTACCGTTGGTCATGTTGGTTCTCCTCATTTCTAAGACAGTGGCAGATTGTTTTAACAAAGGTGTTTATGATCAAATTGTGGAGTTTAAGGGACTACCTTATTTGGAAGCACATGCAGAGCCGTATATGAGGAATTTAGTTGCAGGTGACGTTGTTTCTGGTCCACTGTTTTCTTTTTGTGGGATCGAGAAAGTGGGGAATATTGTTCATACTTTGAAGGTGACAACACATCATGGATTTCCTGTAATTGACGAGCCACCTTTGACGGCTTCGCCTGAGTTGTGCGGGTTGGTATTGAGGTCTCATCTGCTGGTACTTCTCAAGCACAAAACATTGTTCACTAAGGAGAGAATGGTGACAGGATCTACCATCATGAACAAGGTTAAGGCAAGTGATTTTGCGAAACCGGGTTTGGGGAGAGGGATAAGGGTGGAGGATTTAGACATTTCACAAGAGGATATGGAAATGTTTGTTGATCTTCATCCAATCACTAATACATCTCCATATACTGTTGTTGAAACAATGTCTCTTGCAAAAGCTGCTCTTCTTTTCAGGGAGCTTGGACTCAGGCATTTGCTCGTCGTGCCCAAGAAACCAGGAAGGCCTCCAATTGTTGGGATCCTGACAAGGCATGATTTCATGTCTGATTATATCTTTGGGCTATTCCCCAACTTGAATTCCCGCAAGTAG 2322 0.4384 MEWVAETEERIEIGSDGHDDDDYTINQKQPLLLRKRINNSSQQAIVGANICPIQSLDYELIENDLLKQDWRSRTKVEIYQYVVLKWTLALLIGLITGFVGFFNNLGVENIAGFKILLTNNLMLKQKYHEAFALYVGCNMILGVAAAALCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKILGSILGVAAGFIVGKEGPMVHTGACIANLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRSLIQFCHQGGGKCGLFGQGGLIMFDVNSATPSYTTVDLLAVIFLGVIGGLMGSLYNYLVDKVLRTYTTINERGPIFKILLVMIISFVTSCIRFGLPLLSKCVPCPGECPSPPTASFSIHYDNFQCPPNHYNDLSSLFFTTNDNAIRNLFNDSSKSTNAGFQLLTLIIFFVAIYLLGIVTYGVAIPSGLFIPVILAGASYGRLIGTVLAQFTVLDTGLFALLGAASFLGGTMRMTVSLCVILLELTDNLLMLPLVMLVLLISKTVADCFNKGVYDQIVEFKGLPYLEAHAEPYMRNLVAGDVVSGPLFSFCGIEKVGNIVHTLKVTTHHGFPVIDEPPLTASPELCGLVLRSHLLVLLKHKTLFTKERMVTGSTIMNKVKASDFAKPGLGRGIRVEDLDISQEDMEMFVDLHPITNTSPYTVVETMSLAKAALLFRELGLRHLLVVPKKPGRPPIVGILTRHDFMSDYIFGLFPNLNSRK 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00016 773 PRINTS Chloride channel signature 528 547 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre3g00016 773 PRINTS Chloride channel signature 510 526 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre3g00016 773 PRINTS Chloride channel signature 249 268 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre3g00016 773 PRINTS Chloride channel signature 566 580 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre3g00016 773 PRINTS Chloride channel signature 154 171 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre3g00016 773 PRINTS Chloride channel signature 185 204 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre3g00016 773 PRINTS Chloride channel signature 478 498 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre3g00016 773 ProSiteProfiles CBS domain profile. 707 768 IPR000644 -
Trre3g00016 773 SUPERFAMILY Clc chloride channel 63 582 IPR014743 -
Trre3g00016 773 CDD ClC_6_like 54 579 - -
Trre3g00016 773 Pfam Voltage gated chloride channel 142 560 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trre3g00016 773 Gene3D - 581 760 IPR046342 -
Trre3g00016 773 Pfam CBS domain 709 758 IPR000644 -
Trre3g00016 773 PRINTS Plant CLC chloride channel signature 427 443 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre3g00016 773 PRINTS Plant CLC chloride channel signature 270 278 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre3g00016 773 PRINTS Plant CLC chloride channel signature 284 294 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre3g00016 773 PRINTS Plant CLC chloride channel signature 59 67 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trre3g00016 773 CDD CBS_pair_voltage-gated_CLC_euk_bac 582 758 - -
Trre3g00016 773 SUPERFAMILY CBS-domain pair 583 759 IPR046342 -
Trre3g00016 773 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 26 762 - -
Trre3g00016 773 Gene3D Clc chloride channel 77 580 - -
Trre3g00016 773 FunFam Chloride channel ClC3 77 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00016 Trre-Chr3 177082 181857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00016 21 773 Ion Channels AT5G49890 74.406 0.0 1104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00016 K05016 - cave:132178584 1101.66