Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00008 ATGGGTGGCAGAATAGAATGGGTGAAGGGTAAAATGGTTGGATGCGGATCTTTTGGCAGTGTTCATCTAGCCATGAATAAATCTAGCGGTGGACTTTTCGTAGTGAAAACATCGGATTCAGAGGTAGGACATGATGCTCTAAAGAACGAGGTGAATATGCTAAATACTATAAATAATTCATCACCCTATATTGTACAATGTTTAGGGACAGAGTATGATCATGATCAAGATAACAAACTGCATGTTTTCATGGAATATATGGCCGGGGGTAGTTTGGCTGACGTGTCAAACAAGTTTGGAGGTTCATTAGACGAAGATGTTGTCCGTTTATATACAAGACAAATTCTCCTTGGGTTATATGATCTTCACAAACACGGCATTGTTCATTGCGACCTTAAGTGCAAAAATGTGCTTTTGGCCTCATCTGGGAACGTCAAGCTGGCTGATCTTGGATGTGCAAAAAGGGTGGTAAAGAAGAACGACTTAAACATGAACATGAACATGAACATGAACAAACTATCATCATGTATTAATATTCTTACTAACGGTGGCACCCCTTTATGGATGGCACCCGAAGTATTACTAAATGATGAGAGGGTTGTTGATTTTGCTGCAGATATATGGTCTTTGGGGTGTACTGTTATTGAAATGGCCACTGGCAGGCCTCCTTGGGGTGACAACCTCATTTCTACTTCAAATCCAATAGCTGCTATGTTTAAGATTGCTCGAGGTGATGAGGTACCTCAATTTCCACTTCATTTCTCTCATGAGGGTTTTGATTTCTTGAGGAGGTGTTTGGTTAGAGATCCCAATAAGAGGCCTACCGCACATGAGTTACTTAACCACCCATTTATTATTTCAACTACTTTAACTTATCACAAACACTACTCTGCTTCCTCACCTGCAGCTGTCTTGGATGTTCATCAATTTGAGGATACTTATGATGATGATGACGACGACGACGACGAATTACGACAATTGAACAAATTCTCCATCACAAATGAGTTTGTGTCCCCACAAGGAACAACAATGTGGGAACTGGAAGATGGGGCATCAGAGTATTATTGGATCACTGTTAGATCAAGGGATCAATAG 1095 0.4064 MGGRIEWVKGKMVGCGSFGSVHLAMNKSSGGLFVVKTSDSEVGHDALKNEVNMLNTINNSSPYIVQCLGTEYDHDQDNKLHVFMEYMAGGSLADVSNKFGGSLDEDVVRLYTRQILLGLYDLHKHGIVHCDLKCKNVLLASSGNVKLADLGCAKRVVKKNDLNMNMNMNMNKLSSCINILTNGGTPLWMAPEVLLNDERVVDFAADIWSLGCTVIEMATGRPPWGDNLISTSNPIAAMFKIARGDEVPQFPLHFSHEGFDFLRRCLVRDPNKRPTAHELLNHPFIISTTLTYHKHYSASSPAAVLDVHQFEDTYDDDDDDDDELRQLNKFSITNEFVSPQGTTMWELEDGASEYYWITVRSRDQ 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00008 364 Pfam Protein kinase domain 9 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00008 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Trre3g00008 364 SMART serkin_6 7 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00008 364 ProSiteProfiles Protein kinase domain profile. 7 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g00008 364 SUPERFAMILY Protein kinase-like (PK-like) 7 316 IPR011009 -
Trre3g00008 364 ProSitePatterns Protein kinases ATP-binding region signature. 13 36 IPR017441 GO:0005524
Trre3g00008 364 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 7 362 - -
Trre3g00008 364 CDD STKc_MAPKKK 6 285 - -
Trre3g00008 364 Gene3D Transferase(Phosphotransferase) domain 1 6 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00008 Trre-Chr3 148947 150041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00008 5 299 MAP Kinase Kinase Kinase AT3G06030 40.000 1.85e-63 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre3g00008 Pkinase 7.3e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00008 - K20716 psat:127086258 488.419