Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00005 ATGGCTTCAAATCATTTGTCAGCTACAAGCCGTGCAGGGGCAACTAATGATGCTTTATACAAGGAATTATGGCATGCCTGTGCTGGACCCCTTGTCACTCTTCCCCGTGAAGGGGAAAGAGTTTATTACTTCCCTCAAGGTCACATGGAACAGCTCGAGGCATCCATGAATCAGGGATTAGAGCAGCAAATGCCTTCCTTTAATCTACCTTCTAAAATATTATGTAAAGTGGTCAATATTCATCTCCGGGCTGAACCTGAAACAGATGAAGTATATGCACAAATAACTTTGCTACCTGAAACCGATCAAAGTGAGGTGACAAGCCCAGACGATCCTCTGCCTGAACCTCCAAGGTGTACAGTTCATTCATTTTGCAAGACACTTACAGCTTCTGACACTAGCACTCATGGAGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTCTACCACCACTGGACATGACTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCACGGGAATGAATGGCATTTTCGACATATTTTTCGCGGGCAACCCAGGCGCCACTTACTAACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGACGCATTTATATTTTTAAGGCAAGTTTCTCAGGGTGAAAATGGAGAGCTTCGAGTTGGAGTCAGGAGGCTCATGAGACAGCAAAGCAATGTGCCATCTTCTGTTATTTCTAGTCACAGCATGCATCTTGGTGTTTTGGCCACTGCATCTCATGCCATTTCCACCGGAACATTGTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTAAGTATTAACAAGTATCTTGAAGCTCGAAATCATAAACTTTCTGTTGGGATGCGATTCAAAATGAGGTTCGAGGGTGATGAAGTACCTGAAAGAAGGTTCAGTGGTACAATTGTGGGTGTTGAAGATAATAAATCGTCCGTTTGGGCTGATTCTGAGTGGCGATCACTAAAGGTTCAATGGGATGAACCGTCATCAATTCTGCGTCCAGATAAAGTTTCTCCATGGGAATTGGAGCCACTTGTATCTACCCCTCTGGCAAATGCCCAGCCAACCCAACGAAACAAGAGATCACGGCCTCCTGTTCTCCCGTCAACAACGCCCGATTCTTCTCTGCAAGGCATATGGAAATCACCAATTGAATCTCCACCTTTCCCTTATCGTGACCCTCAACATGGACGAGACCTCTATCCATCATCAAGATTCAGCTCTACTGCGACCAGCTTTCTTGGTTTTGGTGGGAACAGCCCTGCTTCTAACAAGTCAATATATTGGTCAAGTAGATTGGAAAACTCTACCGAACCTTTTTTGCCTACAGCACTTAAAGAATCTGGGGAGAAGAGACAAGGCACTGGAAATGGCTGTAGACTCTTTGGGATTCAGTTACTTGAGAATTCTAATGCAGAAGAAAGTCTGCAAACAATTCCTTTGTCAGGAATGGTGGGTGATGATAGGTCTGTTCCGTCCTTGGATGCCGAGTCTGACCAACATTCTGAACCGTCAAATGTTAATCGGTCTGATATTCCTTCAGTAAGCCTTGATGCTGACAAATCATGCCTGCGGTCTCCTCAGGAGTCACAAAGCAGACAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTAACACGTTTTGATGGATATGATGATCTGCTTAGGAAATTGGAAGAGATGTTCGACATTGAGGGTGAACTCTGTGGGGCAACAAAAAAATGGCTGGTCGTTTACACTGACAATGAAGATGATAGGATGATGGTTGGGGATGATCCATGGCTTGAATTTTGTAGCGTTGTGAGGAAAATTTTCATCTACACACCAGATGAGGTGAAGAAGCTCTCACCCAAAATTGGTCTTCCGACCAATGAAGAAGGTAAACCAAGCAAACTGGATTGCGAAGCAGTTGTCAATCCTGAGGACCAGTCATCTATTGTGGGGCCTGGTTGCTAA 2025 0.4469 MASNHLSATSRAGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNIHLRAEPETDEVYAQITLLPETDQSEVTSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRQVSQGENGELRVGVRRLMRQQSNVPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSEFIVSINKYLEARNHKLSVGMRFKMRFEGDEVPERRFSGTIVGVEDNKSSVWADSEWRSLKVQWDEPSSILRPDKVSPWELEPLVSTPLANAQPTQRNKRSRPPVLPSTTPDSSLQGIWKSPIESPPFPYRDPQHGRDLYPSSRFSSTATSFLGFGGNSPASNKSIYWSSRLENSTEPFLPTALKESGEKRQGTGNGCRLFGIQLLENSNAEESLQTIPLSGMVGDDRSVPSLDAESDQHSEPSNVNRSDIPSVSLDADKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYDDLLRKLEEMFDIEGELCGATKKWLVVYTDNEDDRMMVGDDPWLEFCSVVRKIFIYTPDEVKKLSPKIGLPTNEEGKPSKLDCEAVVNPEDQSSIVGPGC 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00005 674 ProSiteProfiles B3 DNA-binding domain profile. 124 230 IPR003340 GO:0003677
Trre3g00005 674 ProSiteProfiles PB1 domain profile. 550 643 IPR000270 GO:0005515
Trre3g00005 674 Pfam AUX/IAA family 547 640 IPR033389 -
Trre3g00005 674 SUPERFAMILY CAD & PB1 domains 552 627 - -
Trre3g00005 674 SMART B3_2 124 230 IPR003340 GO:0003677
Trre3g00005 674 Pfam B3 DNA binding domain 124 228 IPR003340 GO:0003677
Trre3g00005 674 MobiDBLite consensus disorder prediction 496 545 - -
Trre3g00005 674 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 639 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre3g00005 674 FunFam Auxin response factor 545 639 - -
Trre3g00005 674 Pfam Auxin response factor 254 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre3g00005 674 MobiDBLite consensus disorder prediction 362 406 - -
Trre3g00005 674 SUPERFAMILY DNA-binding pseudobarrel domain 113 257 IPR015300 -
Trre3g00005 674 FunFam Auxin response factor 122 230 - -
Trre3g00005 674 MobiDBLite consensus disorder prediction 511 545 - -
Trre3g00005 674 MobiDBLite consensus disorder prediction 363 395 - -
Trre3g00005 674 Gene3D - 291 364 - -
Trre3g00005 674 CDD B3_DNA 122 228 IPR003340 GO:0003677
Trre3g00005 674 Gene3D - 545 639 - -
Trre3g00005 674 Gene3D - 121 230 IPR015300 -
Trre3g00005 674 FunFam Auxin response factor 291 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00005 Trre-Chr3 130991 138790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g00005 1 668 B3 DNA Binding Superfamily AT1G59750 70.431 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre3g00005 AUX_IAA 5.4e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00005 K14486 - gmx:100793224 1202.96